PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G264200.1.p
Common NameGLYMA_19G264200, LOC100305347
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 342aa    MW: 38560.6 Da    PI: 6.3661
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G264200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.99.5e-182774148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+WT +Ed+ l+++++ +G g+W++ ar  g++Rt+k+c++rw++yl
  Glyma.19G264200.1.p 27 RGPWTVDEDLALINYIANHGEGRWNSLARSAGLKRTGKSCRLRWLNYL 74
                         89********************************************97 PP
2Myb_DNA-binding48.42.1e-1580123146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Glyma.19G264200.1.p  80 RGNITLEEQLLILELHGRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 123
                          7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.4372274IPR017930Myb domain
SuperFamilySSF466891.16E-3024121IPR009057Homeodomain-like
SMARTSM007171.4E-142676IPR001005SANT/Myb domain
PfamPF002493.7E-162774IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.4E-222881IPR009057Homeodomain-like
CDDcd001673.00E-112974No hitNo description
PROSITE profilePS5129423.58975129IPR017930Myb domain
SMARTSM007171.0E-1379127IPR001005SANT/Myb domain
PfamPF002493.7E-1480123IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-2282128IPR009057Homeodomain-like
CDDcd001673.9E-795123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MEVKGRISNS TITTTTIQSE DEMDLRRGPW TVDEDLALIN YIANHGEGRW NSLARSAGLK  60
RTGKSCRLRW LNYLRPDVRR GNITLEEQLL ILELHGRWGN RWSKIAQYLP GRTDNEIKNY  120
WRTRVQKQAK QLKCDVNSKQ FKDAMRYLWM PRLVERIQAA AAAATTATAT VGSPTASASA  180
TTTITTNNNA TTYNYENNNN NNLNNSFEVH SGNMMLRNPA IMNINNFVGS HSYTPENNST  240
GASSDSFGAQ VSPVSDLTQD YYNNVTVENN NNNNNPNPEY YQQAHDQLSF LDCITSPSGL  300
FDFQSMEPNT PWIQSNVGDT STNGFWNVEN MLLFQQLSDN M*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-252412124120MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G264200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003546301.10.0transcription factor MYB108
RefseqXP_028203043.10.0transcription factor MYB108-like
TrEMBLA0A445GTI00.0A0A445GTI0_GLYSO; Transcription factor MYB2
TrEMBLI1MGB30.0I1MGB3_SOYBN; Uncharacterized protein
STRINGGLYMA15G14620.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87534125
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.18e-84myb domain protein 78