PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G262700.1.p
Common NameGLYMA_19G262700, LOC100810376
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 300aa    MW: 33329.1 Da    PI: 5.8476
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G262700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.42e-1955104255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++a +++++g
  Glyma.19G262700.1.p  55 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDAEARRIRG 104
                          69*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.0E-3255114IPR001471AP2/ERF domain
PROSITE profilePS5103224.09255112IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-2255113IPR016177DNA-binding domain
CDDcd000184.79E-3355113No hitNo description
SMARTSM003802.8E-3755118IPR001471AP2/ERF domain
PfamPF008476.0E-1256104IPR001471AP2/ERF domain
PRINTSPR003677.6E-125667IPR001471AP2/ERF domain
PRINTSPR003677.6E-127894IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MCGGAIISDF ILLFETSNIL RVFWENWLKN GSTTAKSVAF QVRAEKFANR KRKNQYRGIR  60
QRPWGKWAAE IRDPRKGVRV WLGTFNTAEE AARAYDAEAR RIRGKKAKVN FPEEAPGTSV  120
KRSKVNPQEN LSHKFGAGNN HMDLVEQKPL VNQYANMASF PGSGNGLTSL PSSDDVTLYF  180
SSDQGSNSFG WSEQGPKTPE ISSMLSAPLD CESHFVQNAN QQPNSQNVVS MEDDSAKRLS  240
EERVDIESEL KFFQMAYLEG SWGDTSLESL LSGDTTQDGG NLMNLWSFDD IPSMSSGVF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2155112260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A2e-21551141474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.358030.0epicotyl| root
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G262700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0979130.0BT097913.1 Soybean clone JCVI-FLGm-16M24 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006604931.10.0ethylene-responsive transcription factor RAP2-2
RefseqXP_028219357.10.0ethylene-responsive transcription factor RAP2-2-like
SwissprotQ6K7E63e-54ERF1_ORYSJ; Ethylene-responsive transcription factor 1
TrEMBLA0A0B2PPP40.0A0A0B2PPP4_GLYSO; Ethylene-responsive transcription factor 1
TrEMBLK7N0G80.0K7N0G8_SOYBN; Uncharacterized protein
STRINGGLYMA19G45200.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48083252
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14230.35e-49related to AP2 2
Publications ? help Back to Top
  1. Kim CY, et al.
    Identification of rice blast fungal elicitor-responsive genes by differential display analysis.
    Mol. Plant Microbe Interact., 2000. 13(4): p. 470-4
    [PMID:10755311]
  2. Koo SC, et al.
    OsBWMK1 mediates SA-dependent defense responses by activating the transcription factor OsWRKY33.
    Biochem. Biophys. Res. Commun., 2009. 387(2): p. 365-70
    [PMID:19607808]
  3. Iwamoto M,Takano M
    Phytochrome-regulated EBL1 contributes to ACO1 upregulation in rice.
    Biotechnol. Lett., 2011. 33(1): p. 173-8
    [PMID:20872166]
  4. Serra TS, et al.
    OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors.
    Plant Mol. Biol., 2013. 82(4-5): p. 439-55
    [PMID:23703395]
  5. Jisha V, et al.
    Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.
    PLoS ONE, 2015. 10(6): p. e0127831
    [PMID:26035591]
  6. Lourenço TF, et al.
    The Rice E3-Ubiquitin Ligase HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE1 Modulates the Expression of ROOT MEANDER CURLING, a Gene Involved in Root Mechanosensing, through the Interaction with Two ETHYLENE-RESPONSE FACTOR Transcription Factors.
    Plant Physiol., 2015. 169(3): p. 2275-87
    [PMID:26381316]