PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.19G259500.1.p

Common Name

GLYMA_19G259500, LOC100807338

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

NAC

Protein Properties

Length: 266aa MW: 30624.8 Da PI: 7.0841

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.19G259500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	161.7	2.7e-50	16	144	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatg 87 +ppGfrFhPt+eel+++yL+kkv+++k++l +vi++vd++++ePwd+++ k+ + +++wy Fs++dkky+tg+r+nra+ g+Wkatg Glyma.19G259500.1.p 16 VPPGFRFHPTEEELLQYYLRKKVSNEKIDL-DVIRDVDLNRLEPWDIQEmcKIGSsPQNDWYLFSHKDKKYPTGSRTNRAIIVGFWKATG 104 69**************************.9***********953433332455*****************9***** PP NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +dk ++s +g+ +g++ktLvfykgrap+g+k+dW+mheyrl Glyma.19G259500.1.p 105 RDKVIYS-NGKIIGMRKTLVFYKGRAPNGQKSDWIMHEYRL 144 ***.999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.66E-57	5	165	IPR003441	NAC domain
PROSITE profile	PS51005	55.768	16	165	IPR003441	NAC domain
Pfam	PF02365	2.6E-26	17	144	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MPEMKMSICV NGESQVPPGF RFHPTEEELL QYYLRKKVSN EKIDLDVIRD VDLNRLEPWD 60 IQEMCKIGSS PQNDWYLFSH KDKKYPTGSR TNRAIIVGFW KATGRDKVIY SNGKIIGMRK 120 TLVFYKGRAP NGQKSDWIMH EYRLDDINNT NEMEHGWVVC RVFKKKNVPL KTLDSPKSMT 180 MNMFTESDYC GGFTNWESLD QLVASQLNGQ TETYCSDLQF PAFLSSSYIA TTTHIAPTIQ 240 DYPSYDIDLW NHCASRVSNT PNVTL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	3e-49	4	167	3	170	Stress-induced transcription factor NAC1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in various aboveground tissues undergoing thickening of the lignified secondary wall such as anthers, filaments of stamens, the base of carpels, styles, the boundaries between siliques and pedicels, the midrib of leaf veins, and inflorescence stems, specifically in interfascicular fibers (sclerenchyma), cells differentiating into vascular vessels, and xylary fibers (secondary xylem). {ECO:0000269\|PubMed:16214898, ECO:0000269\|PubMed:17237351}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269\|PubMed:16214898, ECO:0000269\|PubMed:17237351, ECO:0000269\|PubMed:17333250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.19G259500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003553799.1	0.0	NAC domain-containing protein 43
Refseq	XP_028216131.1	0.0	NAC domain-containing protein 43-like
Swissprot	Q84WP6	8e-99	NAC43_ARATH; NAC domain-containing protein 43
TrEMBL	A0A0R0F4Y2	0.0	A0A0R0F4Y2_SOYBN; Uncharacterized protein
TrEMBL	A0A445FLP7	0.0	A0A445FLP7_GLYSO; NAC domain-containing protein 43
STRING	GLYMA19G44890.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF20219	3	5
Representative plant	OGRP17	15	800

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46770.1	1e-101	NAC family protein

Link Out ? help Back to Top
Phytozome	Glyma.19G259500.1.p
Entrez Gene	100807338

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Gondolf VM, et al. A gene stacking approach leads to engineered plants with highly increased galactan levels in Arabidopsis. BMC Plant Biol., 2014. 14: p. 344 [PMID:25492673] Jaradat MR,Ruegger M,Bowling A,Butler H,Cutler AJ A comprehensive transcriptome analysis of silique development and dehiscence in Arabidopsis and Brassica integrating genotypic, interspecies and developmental comparisons. GM Crops Food, 2014. 5(4): p. 302-20 [PMID:25523176] Yuan Y,Teng Q,Zhong R,Ye ZH TBL3 and TBL31, Two Arabidopsis DUF231 Domain Proteins, are Required for 3-O-Monoacetylation of Xylan. Plant Cell Physiol., 2016. 57(1): p. 35-45 [PMID:26556650] Yang C, et al. Transcription Factor MYB26 Is Key to Spatial Specificity in Anther Secondary Thickening Formation. Plant Physiol., 2017. 175(1): p. 333-350 [PMID:28724622] Pascual MB, et al. PpNAC1, a main regulator of phenylalanine biosynthesis and utilization in maritime pine. Plant Biotechnol. J., 2018. 16(5): p. 1094-1104 [PMID:29055073] Liu C,Yu H,Li L SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana. PLoS Genet., 2019. 15(1): p. e1007928 [PMID:30657769]