PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G256800.1.p
Common NameGLYMA_19G256800, LOC100802036
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 186aa    MW: 20293.7 Da    PI: 5.084
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G256800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.14.5e-182676155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f  +e+Aa+a++ a+ +l+g
  Glyma.19G256800.1.p 26 PVYRGVRKRR-WGKWVSEIREPRK---KNRIWLGSFPVPEMAARAYDVAAYCLKG 76
                         68*****887.**********854...59************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.5E-122676IPR001471AP2/ERF domain
PROSITE profilePS5103223.6172784IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-212786IPR016177DNA-binding domain
SMARTSM003804.2E-352790IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-312785IPR001471AP2/ERF domain
CDDcd000182.74E-302885No hitNo description
PRINTSPR003671.6E-122839IPR001471AP2/ERF domain
PRINTSPR003671.6E-126686IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MDHQPPPYPA AASAATDNPR GGTRHPVYRG VRKRRWGKWV SEIREPRKKN RIWLGSFPVP  60
EMAARAYDVA AYCLKGRKAH LNFPDEVDSL PLPSSRSARD IQAAAAQAAR MMKASGNDEK  120
SGIASDDGDS CGDDFWGEIE LPELMDGECC WGCPAGASSW TSSGDLAEWP EEELSPQQPL  180
FMACL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-182288976Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G256800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003553792.11e-134ethylene-responsive transcription factor ERF023
RefseqXP_028217672.11e-134ethylene-responsive transcription factor ERF023-like
SwissprotQ1ECI26e-53ERF23_ARATH; Ethylene-responsive transcription factor ERF023
TrEMBLA0A445FLT21e-133A0A445FLT2_GLYSO; Ethylene-responsive transcription factor ERF023
TrEMBLI1NCM81e-133I1NCM8_SOYBN; Uncharacterized protein
STRINGGLYMA19G44580.11e-134(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63752847
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01250.17e-53ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]