PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.19G254800.1.p | ||||||||
Common Name | GLYMA_19G254800, LOC100790050 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | WRKY | ||||||||
Protein Properties | Length: 363aa MW: 41242.5 Da PI: 5.979 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 90.5 | 1.3e-28 | 128 | 189 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK++ ++fpr+YYrCt++ gC ++k+v+rs+edp+++e+tY+g+H+++ Glyma.19G254800.1.p 128 LDDGYSWRKYGQKDILRAKFPRGYYRCTHRnvqGCLATKQVQRSDEDPTTIEVTYRGRHTCT 189 59***************************98999**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.6E-27 | 121 | 190 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 22.286 | 123 | 186 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.32E-25 | 127 | 190 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.2E-39 | 128 | 190 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.8E-26 | 129 | 188 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
MEESTKRKHT SLIHELIQGK ELTKQLSNHL VSSSPMSHQT NELFVEKILL SYEKALTMLN 60 WGSIMGEAKT TSGNIMDSHC SFTNGGSPRS EVVDRELEHK AALKKRKTMP RWTEQVKICS 120 RRGLEGSLDD GYSWRKYGQK DILRAKFPRG YYRCTHRNVQ GCLATKQVQR SDEDPTTIEV 180 TYRGRHTCTQ AKHLNKAFPS NIKACLGENQ FQKNQPLLEK IQQQTPEVIF TFETELKVKT 240 EELETKEDIF PWFSFPSPSI GSENEDNMLP ETMFENHFME SFSPVFLSPA TSESNPFCLS 300 AYHLDSTGLL CQNIQTSESD ITEIVSAPTS VTKSPILDLD ILLDKGDFDT DFPFNIPEFF 360 SS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 1e-20 | 127 | 188 | 7 | 68 | OsWRKY45 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.25234 | 0.0 | root | ||||
Gma.27516 | 0.0 | epicotyl| flower| hypocotyl| leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.19G254800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU019579 | 0.0 | EU019579.1 Glycine max WRKY43 (WRKY43) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003554762.1 | 0.0 | probable WRKY transcription factor 53 | ||||
Refseq | XP_028218160.1 | 0.0 | probable WRKY transcription factor 53 | ||||
TrEMBL | A0A445FLI8 | 0.0 | A0A445FLI8_GLYSO; Putative WRKY transcription factor 41 | ||||
TrEMBL | I1NCK2 | 0.0 | I1NCK2_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA19G44380.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF493 | 34 | 157 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11070.1 | 2e-49 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.19G254800.1.p |
Entrez Gene | 100790050 |