PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G249500.2.p
Common NameGLYMA_19G249500
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Whirly
Protein Properties Length: 234aa    MW: 25830.5 Da    PI: 9.3463
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G249500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly188.51.1e-58601932137
               Whirly   2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvr 91 
                          vyk+kaa+++ + +ptf++l+sg+++++r+G+++++++ +++erkydWek+q+falsatev++l+ +++++sc+ffhdp++ +sn+G+vr
  Glyma.19G249500.2.p  60 VYKGKAAFSLIPCLPTFTKLNSGTVVVDRRGSIMMTFMHSIGERKYDWEKRQRFALSATEVGSLITMGAQDSCDFFHDPSMLSSNAGQVR 149
                          9***************************************************************************************** PP

               Whirly  92 kalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137
                          k+l+++P+++  G+fv+l+v n+l+++n++fsvPv+ aefav++++
  Glyma.19G249500.2.p 150 KSLSIKPHAN--GYFVSLTVVNNLLNTNDYFSVPVTTAEFAVMKTA 193
                          ********97..69******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.101.0E-7147212IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544472.04E-6051212IPR009044ssDNA-binding transcriptional regulator
PfamPF085366.0E-5660192IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MFKLSRMLPL TSTSRLLEVL SSRKVEVGDR LSHSAGISTA TNNYAAKGYA SDRIFAPYTV  60
YKGKAAFSLI PCLPTFTKLN SGTVVVDRRG SIMMTFMHSI GERKYDWEKR QRFALSATEV  120
GSLITMGAQD SCDFFHDPSM LSSNAGQVRK SLSIKPHANG YFVSLTVVNN LLNTNDYFSV  180
PVTTAEFAVM KTACSFALPH IMGWDQITNQ QSRGIDDLQV KGDSKVSDLE WEK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4kop_A5e-86512108169Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_B5e-86512108169Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_C5e-86512108169Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_D5e-86512108169Single-stranded DNA-binding protein WHY2, mitochondrial
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.136760.0cotyledon| hypocotyl| leaf| root| somatic embryo| stem
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G249500.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0948850.0BT094885.1 Soybean clone JCVI-FLGm-6I20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003554728.11e-174single-stranded DNA-binding protein WHY2, mitochondrial
SwissprotD9J0343e-89WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLA0A0R0ESQ81e-174A0A0R0ESQ8_SOYBN; Uncharacterized protein
STRINGGLYMA19G43880.21e-172(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.12e-82WHIRLY 2