PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.19G247600.8.p | ||||||||
Common Name | GLYMA_19G247600, LOC100813604 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | G2-like | ||||||||
Protein Properties | Length: 376aa MW: 41764.8 Da PI: 5.4963 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 109.7 | 1.5e-34 | 183 | 237 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHe+Fveav+qLGGs+kAtPk +l+lmkv+gLt++hvkSHLQkYR+ Glyma.19G247600.8.p 183 KPRMRWTPELHEAFVEAVNQLGGSDKATPKGVLNLMKVEGLTIYHVKSHLQKYRT 237 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.906 | 180 | 240 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.69E-18 | 181 | 237 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.4E-32 | 181 | 239 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.9E-25 | 183 | 237 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.6E-10 | 185 | 236 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 2.9E-21 | 270 | 314 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 376 aa Download sequence Send to blast |
MYTPCAGQTK LIHLGASRAM STSSRALPTP LENKYMKPPD SFQLSPVRDL TANSASSNSI 60 RSAGKMLSSP SECPDDIPFS FVSQTSDPFQ DILGFPENVS VQHDQVQNNG CYINDDNVKR 120 SDFGEWVDQL MSIDDSLHPN WSQLLGDDNV AEPKPKASHV PQQQHIASVE VVGNSASTAP 180 QTKPRMRWTP ELHEAFVEAV NQLGGSDKAT PKGVLNLMKV EGLTIYHVKS HLQKYRTARY 240 KPEPSEGNSE KKVTPMEEMK SLDLKTSKGI TEALRLQMEL QKRLHEQLEI QRKLQIQIED 300 QGKRLQMMFE KQGEMGDNKV NGSSDTNEEG DKFESIPKAM PEEKDSSTRK QIAGEAEEVI 360 NEDEAAPPTK RVKSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 6e-31 | 183 | 241 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 6e-31 | 183 | 241 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 6e-31 | 183 | 241 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 6e-31 | 183 | 241 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 6e-31 | 183 | 241 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 6e-31 | 183 | 241 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 6e-31 | 183 | 241 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 6e-31 | 183 | 241 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.29161 | 0.0 | leaf| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoots and roots. {ECO:0000269|PubMed:20838596}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor acting as central integrator of phosphate starvation responses (PubMed:20838596). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). {ECO:0000269|PubMed:20838596, ECO:0000269|PubMed:23788639}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.19G247600.8.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not up-regulated by Pi starvation. {ECO:0000269|PubMed:26586833}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT096172 | 0.0 | BT096172.1 Soybean clone JCVI-FLGm-25F17 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006603739.1 | 0.0 | MYB-CC domain-containing transcription factor PHR33 isoform X3 | ||||
Refseq | XP_028218886.1 | 0.0 | protein PHR1-LIKE 1-like isoform X3 | ||||
Swissprot | Q8GUN5 | 8e-90 | PHL1_ARATH; Protein PHR1-LIKE 1 | ||||
TrEMBL | A0A0R0F4C3 | 0.0 | A0A0R0F4C3_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA19G43690.5 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G29000.2 | 3e-90 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.19G247600.8.p |
Entrez Gene | 100813604 |
Publications ? help Back to Top | |||
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