PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G247600.1.p
Common NameGLYMA_19G247600, LOC100813604
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family G2-like
Protein Properties Length: 403aa    MW: 44652.8 Da    PI: 5.1227
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G247600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like109.51.7e-34210264155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          kpr+rWtpeLHe+Fveav+qLGGs+kAtPk +l+lmkv+gLt++hvkSHLQkYR+
  Glyma.19G247600.1.p 210 KPRMRWTPELHEAFVEAVNQLGGSDKATPKGVLNLMKVEGLTIYHVKSHLQKYRT 264
                          79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.906207267IPR017930Myb domain
SuperFamilySSF466893.05E-18208264IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-32208266IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-25210264IPR006447Myb domain, plants
PfamPF002497.3E-10212263IPR001005SANT/Myb domain
PfamPF143793.2E-21297341IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MYTPCAGQTK LIHLGASRAM STSSRALPTP LENKYMKPPD SFQLSPVRDL TANSASSNSI  60
RSAGKMLSSP SECPDDIPFS FVSQTSGDNV SSEIHSTALI SHPQDNEDLS WGPDPFQDIL  120
GFPENVSVQH DQVQNNGCYI NDDNVKRSDF GEWVDQLMSI DDSLHPNWSQ LLGDDNVAEP  180
KPKASHVPQQ QHIASVEVVG NSASTAPQTK PRMRWTPELH EAFVEAVNQL GGSDKATPKG  240
VLNLMKVEGL TIYHVKSHLQ KYRTARYKPE PSEGNSEKKV TPMEEMKSLD LKTSKGITEA  300
LRLQMELQKR LHEQLEIQRK LQIQIEDQGK RLQMMFEKQG EMGDNKVNGS SDTNEEGDKF  360
ESIPKAMPEE KDSSTRKQIA GEAEEVINED EAAPPTKRVK SS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-31210268260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-31210268260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-31210268260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-31210268260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-31210268260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-31210268260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-31210268260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-31210268260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.291610.0leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in shoots and roots. {ECO:0000269|PubMed:20838596}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as central integrator of phosphate starvation responses (PubMed:20838596). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). {ECO:0000269|PubMed:20838596, ECO:0000269|PubMed:23788639}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G247600.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not up-regulated by Pi starvation. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0961720.0BT096172.1 Soybean clone JCVI-FLGm-25F17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006603736.10.0MYB-CC domain-containing transcription factor PHR33 isoform X1
RefseqXP_028218881.10.0protein PHR1-LIKE 1-like isoform X1
SwissprotQ8GUN52e-90PHL1_ARATH; Protein PHR1-LIKE 1
TrEMBLA0A0R0F4230.0A0A0R0F423_SOYBN; Uncharacterized protein
STRINGGLYMA19G43690.50.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15123498
Representative plantOGRP7817262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G29000.26e-91G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Bonnot C, et al.
    A chemical genetic strategy identify the PHOSTIN, a synthetic molecule that triggers phosphate starvation responses in Arabidopsis thaliana.
    New Phytol., 2016. 209(1): p. 161-76
    [PMID:26243630]
  4. Aleksza D,Horváth GV,Sándor G,Szabados L
    Proline Accumulation Is Regulated by Transcription Factors Associated with Phosphate Starvation.
    Plant Physiol., 2017. 175(1): p. 555-567
    [PMID:28765275]