PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G242600.1.p
Common NameGLYMA_19G242600, LOC100779712
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GeBP
Protein Properties Length: 405aa    MW: 44736.4 Da    PI: 4.5529
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G242600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573122.32.3e-38108203297
               DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91 
                          lfqrlw++eDei lLqG++d+++++g+s ++d+  fy+++k++++++++k+qlveKirrLKkK+++  +k+ sgke+sf+++hdq +fe+
  Glyma.19G242600.1.p 108 LFQRLWTDEDEIELLQGFLDYTSQRGSSHHNDTALFYDQIKSKLQLDFNKNQLVEKIRRLKKKYRNVLNKIGSGKEFSFKSAHDQATFEI 197
                          79**************************************************************************************** PP

               DUF573  92 skkiWg 97 
                          s+kiW 
  Glyma.19G242600.1.p 198 SRKIWS 203
                          *****6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.4E-35109203IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MASQQHDAVF REEDMDDDDD ESQEDGDYEE EDDDVLADDE ENEPSPSTAL AVTVAVPGSS  60
VSNGGAAPIS TPTATTIVVA DSSDPKRRRL EPVEEKKPPP TPDDSRRLFQ RLWTDEDEIE  120
LLQGFLDYTS QRGSSHHNDT ALFYDQIKSK LQLDFNKNQL VEKIRRLKKK YRNVLNKIGS  180
GKEFSFKSAH DQATFEISRK IWSNVTPIGD NSLDDDEINP NRSPNPNLNF SPIILKNEMI  240
FRNPAEKKTP KRSRPRSAVK IEPNDGSASN RDHDCISNAT PTATATAAAT NTTPTAATTN  300
DNCNSGYGNN IPSMIEETVR SCLSPVLKEL MAGAMGGGAF GARGFSLNLN PMPLMNWSFG  360
GGEMVDEKWR KQQILELEVY SKRLELVQDQ IKAAMEELRS HGGG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18589KRRRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.588190.0cotyledon| leaf| root| seed coat| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G242600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003553753.10.0probable transcription factor At3g04930
RefseqXP_028218581.10.0probable transcription factor At3g04930
SwissprotF4K5T43e-89STKLU_ARATH; Probable transcription factor At5g28040
TrEMBLA0A445FL000.0A0A445FL00_GLYSO; Putative transcription factor
TrEMBLI1NC700.0I1NC70_SOYBN; Uncharacterized protein
STRINGGLYMA19G43180.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32553365
Representative plantOGRP31841028
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.11e-77DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. García-Cano E,Hak H,Magori S,Lazarowitz SG,Citovsky V
    The Agrobacterium F-Box Protein Effector VirF Destabilizes the Arabidopsis GLABROUS1 Enhancer/Binding Protein-Like Transcription Factor VFP4, a Transcriptional Activator of Defense Response Genes.
    Mol. Plant Microbe Interact., 2018. 31(5): p. 576-586
    [PMID:29264953]