PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G236900.2.p
Common NameGLYMA_19G236900
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 323aa    MW: 36192.7 Da    PI: 5.7312
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G236900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH413.4e-13128179155
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  Glyma.19G236900.2.p 128 QRMTHIAVERNRRKQMNEYLSVLRSLMPES---YVQRGDQASIIGGAINFVKELE 179
                          79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.78E-13126183No hitNo description
Gene3DG3DSA:4.10.280.105.9E-14126183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.402127178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-16127191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-10128179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.6E-10133184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MCLPEGERGM ALEAVVYPQP QDPFGYGIKD PSYNYNNLLE GGGGNWGFEK EEQGFVTFLE  60
NQTENYPYGE WNCSPSPPSM LPHLNASNPQ SSETSNIHNN LDSSISTPAR PKRRRTKSRK  120
NKEEIENQRM THIAVERNRR KQMNEYLSVL RSLMPESYVQ RGDQASIIGG AINFVKELEQ  180
RLQFLGGQKE KEEKSDVPFS EFFSFPQYST SAGGGCDNST AMSEQKCEAQ SGIADIEVTM  240
VESHANLKIR SKKRPKQLLK IVSSLHGMRL TILHLNVTTT GEIVLYSLSV KVEEDCKLGS  300
VDEIAAAVYQ MLDRIQQESI LN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128139RMTHIAVERNRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.366510.0root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G236900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150381e-143AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003554664.10.0transcription factor bHLH94
RefseqXP_028217279.10.0transcription factor bHLH94-like
SwissprotQ9C7T42e-82BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A0R0F2U20.0A0A0R0F2U2_SOYBN; Uncharacterized protein
TrEMBLA0A445FKT10.0A0A445FKT1_GLYSO; Transcription factor bHLH96
TrEMBLI1NC110.0I1NC11_SOYBN; Uncharacterized protein
STRINGGLYMA19G42520.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.13e-81bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]