PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.19G236400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NF-YC | ||||||||
Protein Properties | Length: 259aa MW: 28739.5 Da PI: 6.5835 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 178.3 | 7e-56 | 77 | 180 | 1 | 101 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd 87 ql++fw++q iek+tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtd Glyma.19G236400.1.p 77 QLQQFWSNQyqeIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTD 166 89******99999***************************************************************************** PP NF-YC 88 ifdflvdivprdel 101 ifdflvdivpr++l Glyma.19G236400.1.p 167 IFDFLVDIVPREDL 180 ***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 4.53E-33 | 71 | 171 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.6E-21 | 99 | 162 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.0E-37 | 100 | 177 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MDHQGHSQNP SMGVVGSGAQ LAYGSNPYQP GQITGPPGSV VTSVGTIQST PAGAQLGQHQ 60 LAYQHIHQQQ QHQLQQQLQQ FWSNQYQEIE KVTDFKNHSL PLARIKKIMK ADEDVRMISA 120 EAPVIFARAC EMFILELTLR SWNHTEENKR RTLQKNDIAA AITRTDIFDF LVDIVPREDL 180 KDEVLASIPR GTMPVAGPAD ALPYCYMPPQ HASQVGAAGV IMGKPVMDPN MYAQQSHPYM 240 APQMWPQPPD QRQSSPEH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 4e-62 | 85 | 177 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 149 | 155 | RRTLQKN |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.19449 | 0.0 | cotyledon| flower| hypocotyl| leaf| root| somatic embryo |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. Present in etiolated seedlings. {ECO:0000269|PubMed:11867211, ECO:0000269|PubMed:17322342}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Interacts with REF6 to directly regulate SOC1 transcription in response to flowering signals from photoperiod and gibberellic acid pathways (PubMed:25105952). {ECO:0000250, ECO:0000269|PubMed:25105952}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.19G236400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT092678 | 0.0 | BT092678.1 Soybean clone JCVI-FLGm-16A14 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001349713.1 | 0.0 | nuclear factor Y transcription factor | ||||
Refseq | XP_014627411.1 | 0.0 | nuclear factor Y transcription factor isoform X1 | ||||
Refseq | XP_028218633.1 | 0.0 | nuclear transcription factor Y subunit C-3-like | ||||
Refseq | XP_028218634.1 | 0.0 | nuclear transcription factor Y subunit C-3-like | ||||
Swissprot | Q8L4B2 | 1e-85 | NFYC9_ARATH; Nuclear transcription factor Y subunit C-9 | ||||
TrEMBL | A0A445FKT2 | 0.0 | A0A445FKT2_GLYSO; Nuclear transcription factor Y subunit C-9 isoform B | ||||
STRING | GLYMA19G42460.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1257 | 34 | 108 | Representative plant | OGRP315 | 17 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08970.4 | 4e-83 | nuclear factor Y, subunit C9 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.19G236400.1.p |