PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.19G222000.2.p | ||||||||
Common Name | GLYMA_19G222000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 396aa MW: 43825.7 Da PI: 9.8752 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 45.7 | 1.2e-14 | 217 | 262 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 hn E++RR++iN+++ +L++l+P++ K++Ka++L A++Y+k L Glyma.19G222000.2.p 217 VHNLSEKKRREKINKKMRTLKDLIPNC-----NKVDKASMLDDAIDYLKTL 262 5*************************8.....6****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.9E-17 | 210 | 269 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.32E-15 | 211 | 267 | No hit | No description |
SuperFamily | SSF47459 | 2.09E-18 | 211 | 272 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.682 | 213 | 262 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.4E-12 | 217 | 262 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.6E-16 | 219 | 268 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 396 aa Download sequence Send to blast |
MAKIRVNPPK ARIPASFMKN LQTYLSPLPQ AIVTYNSAYL HLRSRNKEPI QPKHQDQQNA 60 TQQTKNHSSP ARVEEIEALK VDKSAKETQC FQKQTSLTVE RSTKLPTPAV DEHSEAAGHN 120 CGVLGIHRSQ GQTSTSEALR AKAKAYNNNN INMCHEPLLA SSSVCSLGAS NDPNLGFRKH 180 EDTDDSTYLS DNDGEPEDMV KQDREGNRVK RSRNPEVHNL SEKKRREKIN KKMRTLKDLI 240 PNCNKVDKAS MLDDAIDYLK TLKLQLQANF QIMSMGSGLW PLMMGFRPPQ LPIPPLSAIT 300 DNRLIQMFGS PNQIPPMPMP HAPFFPIIGN SATQSHLANN TTTTAAATTN LAEHLANSLH 360 GNATKLAPPS QISFQHHHTS TSTPTLATPF IFPQK* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 222 | 227 | KKRREK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.1773 | 0.0 | cotyledon| leaf| meristem| seed coat |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.19G222000.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031129 | 0.0 | KT031129.1 Glycine max clone HN_CCL_180 bHLH transcription factor (Glyma19g40980.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001340167.1 | 0.0 | bHLH transcription factor PIF3 | ||||
TrEMBL | A0A0R0F1N2 | 0.0 | A0A0R0F1N2_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA19G40980.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 1e-28 | phytochrome interacting factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.19G222000.2.p |