PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.19G221700.1.p | ||||||||
Common Name | GLYMA_19G221700, LOC100783661 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | WRKY | ||||||||
Protein Properties | Length: 517aa MW: 55591.8 Da PI: 6.5985 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.9 | 1.3e-30 | 274 | 332 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+a+d+ v+++tYeg+Hnh+ Glyma.19G221700.1.p 274 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCADDKAVLITTYEGNHNHP 332 7*********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.6E-33 | 258 | 334 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.24E-28 | 266 | 334 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.712 | 268 | 334 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.4E-37 | 273 | 333 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.6E-27 | 275 | 332 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 517 aa Download sequence Send to blast |
MDNPHHRQLT FFLSHSIDHT DPPSVKEMDF FSTSSAPDHK NNTSTSDTND DYQKRDDQHD 60 THDRHGSITA DGSPTRATDH HVNTGLNLTC ASAGMTKSDN SENPETELSS LENQLGKLQE 120 ENSKLRSVLD QITKNYAQLQ AQLFNALQKQ KLPKNVETKI VDPGASTKLD VVNNASVSDE 180 KTDQDVSVYR SNNAEVMSKT HDRDDDPQLT KLNLGKQACP DAAEDVLDRS SSQSWGSSKL 240 EEQPKTAEQL PAEQIPLRKA RVSVRARSEA PMISDGCQWR KYGQKMAKGN PCPRAYYRCT 300 MAVGCPVRKQ VQRCADDKAV LITTYEGNHN HPLPPAATAM ANTTSAAAAM LLSGSAAPSK 360 EALTNSAGYY SSSSIPYASM ATLSASAPFP TITLDLTQNP NNAMQLHRVP AGHGATFPLP 420 LHAAAAGPHL LGHPLFFQQK LPPAALMPLL QRQPSSSMVE TVSAAIASDP NFTAALMAAI 480 SSIIGVPRSS DDNNNGNGAI PGSPQLPQSC TTFSTN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 3e-21 | 260 | 336 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.50123 | 0.0 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.19G221700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006604764.1 | 0.0 | probable WRKY transcription factor 47 isoform X1 | ||||
TrEMBL | I1NBI8 | 0.0 | I1NBI8_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA19G40950.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10439 | 25 | 41 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01720.1 | 6e-74 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.19G221700.1.p |
Entrez Gene | 100783661 |