PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G219000.1.p
Common NameGLYMA_19G219000, LOC100777760
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 239aa    MW: 27231.9 Da    PI: 8.405
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G219000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding521.6e-162269148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+W+ eEd +l + v+ +G g+W++ ar  g++R++k+c++rw++yl
  Glyma.19G219000.1.p 22 KGPWSVEEDTILQNHVATHGDGRWNSLARSAGLKRSGKSCRLRWLNYL 69
                         79********************************************97 PP
2Myb_DNA-binding47.93e-1575118146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg+ T +E+  +++++ ++G++ W++Iar+++ gRt++++k++w++
  Glyma.19G219000.1.p  75 RGNITLQEQITILELHSRWGNR-WSKIARHLP-GRTDNEIKNYWRT 118
                          7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.1511769IPR017930Myb domain
SuperFamilySSF466892.44E-2920116IPR009057Homeodomain-like
SMARTSM007178.3E-142171IPR001005SANT/Myb domain
PfamPF002493.1E-152269IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-212376IPR009057Homeodomain-like
CDDcd001672.08E-102469No hitNo description
PROSITE profilePS5129422.70970124IPR017930Myb domain
SMARTSM007172.4E-1374122IPR001005SANT/Myb domain
PfamPF002491.4E-1375118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-2177121IPR009057Homeodomain-like
CDDcd001678.43E-1079118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MDVNKVKKAR SIVLDCEEEI RKGPWSVEED TILQNHVATH GDGRWNSLAR SAGLKRSGKS  60
CRLRWLNYLR PDVRRGNITL QEQITILELH SRWGNRWSKI ARHLPGRTDN EIKNYWRTRV  120
IKQARNLNCD VDSKQFQDAL RCVWMPRLIE RIQPPLPIPS ELTHGPAHIA TSQLGPNPTA  180
QAQHEFHGSL ELNAPLDSEH HVWGACHCFN GNSTLPLGGG DLMESLWDDL EIKHNFLA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-231911624120MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in leaves. Expressed in roots and shoots. Expressed at low levels in flowers. {ECO:0000269|PubMed:22301384}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G219000.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150374e-57AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003553674.11e-177transcription factor MYB2
RefseqXP_028217862.11e-177transcription factor MYB2-like
SwissprotQ10MB45e-75MYB2_ORYSJ; Transcription factor MYB2
TrEMBLA0A445FJU31e-176A0A445FJU3_GLYSO; Transcription factor MYB2
TrEMBLK7MZL81e-176K7MZL8_SOYBN; Uncharacterized protein
STRINGGLYMA19G40670.21e-177(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87534125
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.12e-75myb domain protein 112
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]