PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G217000.1.p
Common NameGLYMA_19G217000
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 285aa    MW: 32534.1 Da    PI: 4.8912
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G217000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.76.4e-3076134259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +D ++WrKYGqK++kgs++pr+YY+C+++ gC++kk+ver+++d ++++itY+++Hnh+
  Glyma.19G217000.1.p  76 SDFWSWRKYGQKPIKGSPYPRGYYKCSTSkGCSAKKQVERCRTDASMLIITYTSTHNHP 134
                          699***********************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-3168136IPR003657WRKY domain
PROSITE profilePS5081131.86970136IPR003657WRKY domain
SuperFamilySSF1182907.59E-2673136IPR003657WRKY domain
SMARTSM007743.2E-3575135IPR003657WRKY domain
PfamPF031064.4E-2577134IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MVRIDQACTK TLKNRNTYIA MDNNTCASSQ LESEEASFEH KSETQTSKKR KMVEKTVVAV  60
RTGENVGKLK NEGLPSDFWS WRKYGQKPIK GSPYPRGYYK CSTSKGCSAK KQVERCRTDA  120
SMLIITYTST HNHPCPTAIT TNSPQQPKEL SESETTQDLS ATTKEEDQEH IELEEEQRDN  180
NKPSDEVTNE ENFHYLQSPI RCSGQDIIIE QEDPFKLNTE KSHDRMDLLL EEEPLCFAQL  240
KNLSASKNEE LDFFDELEEL PMSSSFLHFT RNIFSDERIP VAPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-21761371780Disease resistance protein RRS1
5w3x_D2e-21761371780Disease resistance protein RRS1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.358720.0cotyledon| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G217000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0195560.0EU019556.1 Glycine max WRKY8 (WRKY8) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001348186.10.0WRKY transcription factor 8
RefseqXP_028217036.10.0probable WRKY transcription factor 65
TrEMBLA0A0R0ERD00.0A0A0R0ERD0_SOYBN; Uncharacterized protein
STRINGGLYMA19G40470.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97083241
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.18e-37WRKY DNA-binding protein 35