PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G200800.8.p
Common NameGLYMA_19G200800
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-YA
Protein Properties Length: 309aa    MW: 33627.8 Da    PI: 9.349
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G200800.8.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA70.15.1e-221491951158
            CBFB_NFYA  11 yqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                          y++I++RRq+Rak+  ++kl +k  kpy+heSRh hA+rRpRgsgGrF
  Glyma.19G200800.8.p 149 YHGIIRRRQSRAKAVLDHKL-TKRCKPYMHESRHLHAMRRPRGSGGRF 195
                          ********************.999***********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005216.8E-23137198IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115226.751138198IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.8E-15141163IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.8E-19149195IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.8E-15172195IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MAMQTVYLKK HEGNAHNFVG TLSSAASAPW WSAFGSQSVH QGESCGQMKP FALELPNCID  60
QLAATKLSAR GAEQVLGEGH TTQFTIFPDG CKMSDDAQKL QTTISLQSSL TDPHSRFEIG  120
FSQPMLCAKY PYTDQFYGLF SAYAPQISYH GIIRRRQSRA KAVLDHKLTK RCKPYMHESR  180
HLHAMRRPRG SGGRFLNTRS SINGNGKLGN EVHKTVGEQL QSSDSQSSEF LQSEVGTLNS  240
SKETNGSSPN ISGSEVTSMY SRGGLDSFSL NHLGSAVHSF ANMIDGGRGM IIPPKWVAAA  300
GNCYNLKV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.35840.0hypocotyl| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G200800.8.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0925391e-171BT092539.1 Soybean clone JCVI-FLGm-16A23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006604658.10.0nuclear transcription factor Y subunit A-10 isoform X2
RefseqXP_006604659.10.0nuclear transcription factor Y subunit A-10 isoform X2
RefseqXP_006604660.10.0nuclear transcription factor Y subunit A-10 isoform X2
RefseqXP_006604661.10.0nuclear transcription factor Y subunit A-10 isoform X2
RefseqXP_006604662.10.0nuclear transcription factor Y subunit A-10 isoform X2
RefseqXP_014626885.10.0nuclear transcription factor Y subunit A-10 isoform X2
RefseqXP_028215962.10.0nuclear transcription factor Y subunit A-10-like isoform X3
RefseqXP_028215963.10.0nuclear transcription factor Y subunit A-10-like isoform X3
RefseqXP_028215964.10.0nuclear transcription factor Y subunit A-10-like isoform X3
RefseqXP_028215965.10.0nuclear transcription factor Y subunit A-10-like isoform X3
RefseqXP_028215966.10.0nuclear transcription factor Y subunit A-10-like isoform X3
RefseqXP_028215967.10.0nuclear transcription factor Y subunit A-10-like isoform X3
RefseqXP_028215968.10.0nuclear transcription factor Y subunit A-10-like isoform X3
RefseqXP_028215969.10.0nuclear transcription factor Y subunit A-10-like isoform X3
TrEMBLA0A0R0F1V80.0A0A0R0F1V8_SOYBN; Uncharacterized protein
STRINGGLYMA19G38800.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.22e-40nuclear factor Y, subunit A10