PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.19G200800.6.p | ||||||||
Common Name | GLYMA_19G200800, LOC100815382 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NF-YA | ||||||||
Protein Properties | Length: 331aa MW: 36029.6 Da PI: 9.3182 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 96.7 | 2.6e-30 | 161 | 217 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d p+YVNaKQy++I++RRq+Rak+ ++kl +k kpy+heSRh hA+rRpRgsgGrF Glyma.19G200800.6.p 161 DGPIYVNAKQYHGIIRRRQSRAKAVLDHKL-TKRCKPYMHESRHLHAMRRPRGSGGRF 217 57****************************.999***********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 5.8E-35 | 159 | 220 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 34.609 | 160 | 220 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 3.0E-22 | 163 | 185 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 5.0E-27 | 163 | 217 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 3.0E-22 | 194 | 217 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MAMQTVYLKK HEGNAHNFVG TLSSAASAPW WSAFGSQSVH QGESCGQMKP FALELPNCID 60 QLAATKLSAR GAEQVLGEGH TTQFTIFPDG CKMSDDAQKL QTTISLQSSL TDPHSRFEIG 120 FSQPMLCAKY PYTDQFYGLF SAYAPQISGR IMLPLNMSSD DGPIYVNAKQ YHGIIRRRQS 180 RAKAVLDHKL TKRCKPYMHE SRHLHAMRRP RGSGGRFLNT RSSINGNGKL GNEVHKTVGE 240 QLQSSDSQSS EFLQSEVGTL NSSKETNGSS PNISGSEVTS MYSRGGLDSF SLNHLGSAVH 300 SFANMIDGGR GMIIPPKWVA AAGNCYNLKV * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 3e-16 | 163 | 221 | 4 | 62 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.3584 | 0.0 | hypocotyl| root |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.19G200800.6.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT092539 | 0.0 | BT092539.1 Soybean clone JCVI-FLGm-16A23 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006604658.1 | 0.0 | nuclear transcription factor Y subunit A-10 isoform X2 | ||||
Refseq | XP_006604659.1 | 0.0 | nuclear transcription factor Y subunit A-10 isoform X2 | ||||
Refseq | XP_006604660.1 | 0.0 | nuclear transcription factor Y subunit A-10 isoform X2 | ||||
Refseq | XP_006604661.1 | 0.0 | nuclear transcription factor Y subunit A-10 isoform X2 | ||||
Refseq | XP_006604662.1 | 0.0 | nuclear transcription factor Y subunit A-10 isoform X2 | ||||
Refseq | XP_014626885.1 | 0.0 | nuclear transcription factor Y subunit A-10 isoform X2 | ||||
Refseq | XP_028215962.1 | 0.0 | nuclear transcription factor Y subunit A-10-like isoform X3 | ||||
Refseq | XP_028215963.1 | 0.0 | nuclear transcription factor Y subunit A-10-like isoform X3 | ||||
Refseq | XP_028215964.1 | 0.0 | nuclear transcription factor Y subunit A-10-like isoform X3 | ||||
Refseq | XP_028215965.1 | 0.0 | nuclear transcription factor Y subunit A-10-like isoform X3 | ||||
Refseq | XP_028215966.1 | 0.0 | nuclear transcription factor Y subunit A-10-like isoform X3 | ||||
Refseq | XP_028215967.1 | 0.0 | nuclear transcription factor Y subunit A-10-like isoform X3 | ||||
Refseq | XP_028215968.1 | 0.0 | nuclear transcription factor Y subunit A-10-like isoform X3 | ||||
Refseq | XP_028215969.1 | 0.0 | nuclear transcription factor Y subunit A-10-like isoform X3 | ||||
TrEMBL | A0A445FJ09 | 0.0 | A0A445FJ09_GLYSO; Nuclear transcription factor Y subunit A-10 isoform B | ||||
TrEMBL | K7MZC1 | 0.0 | K7MZC1_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA19G38800.2 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06510.2 | 6e-55 | nuclear factor Y, subunit A10 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.19G200800.6.p |
Entrez Gene | 100815382 |
Publications ? help Back to Top | |||
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