PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.19G200800.3.p

Common Name

GLYMA_19G200800, LOC100815382

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

NF-YA

Protein Properties

Length: 331aa MW: 36029.6 Da PI: 9.3182

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.19G200800.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	96.7	2.6e-30	161	217	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d p+YVNaKQy++I++RRq+Rak+ ++kl +k kpy+heSRh hA+rRpRgsgGrF Glyma.19G200800.3.p 161 DGPIYVNAKQYHGIIRRRQSRAKAVLDHKL-TKRCKPYMHESRHLHAMRRPRGSGGRF 217 57**************************.999*********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	5.8E-35	159	220	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	34.609	160	220	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	3.0E-22	163	185	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	5.0E-27	163	217	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	3.0E-22	194	217	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MAMQTVYLKK HEGNAHNFVG TLSSAASAPW WSAFGSQSVH QGESCGQMKP FALELPNCID 60 QLAATKLSAR GAEQVLGEGH TTQFTIFPDG CKMSDDAQKL QTTISLQSSL TDPHSRFEIG 120 FSQPMLCAKY PYTDQFYGLF SAYAPQISGR IMLPLNMSSD DGPIYVNAKQ YHGIIRRRQS 180 RAKAVLDHKL TKRCKPYMHE SRHLHAMRRP RGSGGRFLNT RSSINGNGKL GNEVHKTVGE 240 QLQSSDSQSS EFLQSEVGTL NSSKETNGSS PNISGSEVTS MYSRGGLDSF SLNHLGSAVH 300 SFANMIDGGR GMIIPPKWVA AAGNCYNLKV *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	3e-16	163	221	4	62	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.3584	0.0	hypocotyl\| root

Function -- GeneRIF ? help Back to Top
GmNF-YA1a/b are positive regulators in arbuscular mycorrhiza establishment, whose expression is down-regulated by NARK in the autoregulated root tissue thereby diminishing subsequent infections. [NF-Y1b] [PMID: 23777981]

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.19G200800.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT092539	0.0	BT092539.1 Soybean clone JCVI-FLGm-16A23 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006604658.1	0.0	nuclear transcription factor Y subunit A-10 isoform X2
Refseq	XP_006604659.1	0.0	nuclear transcription factor Y subunit A-10 isoform X2
Refseq	XP_006604660.1	0.0	nuclear transcription factor Y subunit A-10 isoform X2
Refseq	XP_006604661.1	0.0	nuclear transcription factor Y subunit A-10 isoform X2
Refseq	XP_006604662.1	0.0	nuclear transcription factor Y subunit A-10 isoform X2
Refseq	XP_014626885.1	0.0	nuclear transcription factor Y subunit A-10 isoform X2
Refseq	XP_028215962.1	0.0	nuclear transcription factor Y subunit A-10-like isoform X3
Refseq	XP_028215963.1	0.0	nuclear transcription factor Y subunit A-10-like isoform X3
Refseq	XP_028215964.1	0.0	nuclear transcription factor Y subunit A-10-like isoform X3
Refseq	XP_028215965.1	0.0	nuclear transcription factor Y subunit A-10-like isoform X3
Refseq	XP_028215966.1	0.0	nuclear transcription factor Y subunit A-10-like isoform X3
Refseq	XP_028215967.1	0.0	nuclear transcription factor Y subunit A-10-like isoform X3
Refseq	XP_028215968.1	0.0	nuclear transcription factor Y subunit A-10-like isoform X3
Refseq	XP_028215969.1	0.0	nuclear transcription factor Y subunit A-10-like isoform X3
TrEMBL	A0A445FJ09	0.0	A0A445FJ09_GLYSO; Nuclear transcription factor Y subunit A-10 isoform B
TrEMBL	K7MZC1	0.0	K7MZC1_SOYBN; Uncharacterized protein
STRING	GLYMA19G38800.2	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06510.2	6e-55	nuclear factor Y, subunit A10

Link Out ? help Back to Top
Phytozome	Glyma.19G200800.3.p
Entrez Gene	100815382

Publications ? help Back to Top
Schaarschmidt S,Gresshoff PM,Hause B Analyzing the soybean transcriptome during autoregulation of mycorrhization identifies the transcription factors GmNF-YA1a/b as positive regulators of arbuscular mycorrhization. Genome Biol., 2013. 14(6): p. R62 [PMID:23777981]