PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G200800.1.p
Common NameGLYMA_19G200800, LOC100815382
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-YA
Protein Properties Length: 347aa    MW: 37914 Da    PI: 9.3182
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G200800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA96.62.8e-30177233158
            CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                          d p+YVNaKQy++I++RRq+Rak+  ++kl +k  kpy+heSRh hA+rRpRgsgGrF
  Glyma.19G200800.1.p 177 DGPIYVNAKQYHGIIRRRQSRAKAVLDHKL-TKRCKPYMHESRHLHAMRRPRGSGGRF 233
                          57****************************.999***********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005215.8E-35175236IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115234.609176236IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.3E-22179201IPR001289Nuclear transcription factor Y subunit A
PfamPF020455.4E-27179233IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.3E-22210233IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MLLLLLQFLQ LSFILPMAMQ TVYLKKHEGN AHNFVGTLSS AASAPWWSAF GSQSVHQGES  60
CGQMKPFALE LPNCIDQLAA TKLSARGAEQ VLGEGHTTQF TIFPDGCKMS DDAQKLQTTI  120
SLQSSLTDPH SRFEIGFSQP MLCAKYPYTD QFYGLFSAYA PQISGRIMLP LNMSSDDGPI  180
YVNAKQYHGI IRRRQSRAKA VLDHKLTKRC KPYMHESRHL HAMRRPRGSG GRFLNTRSSI  240
NGNGKLGNEV HKTVGEQLQS SDSQSSEFLQ SEVGTLNSSK ETNGSSPNIS GSEVTSMYSR  300
GGLDSFSLNH LGSAVHSFAN MIDGGRGMII PPKWVAAAGN CYNLKV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-16179237462NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.35840.0hypocotyl| root
Function -- GeneRIF ? help Back to Top
  1. GmNF-YA1a/b are positive regulators in arbuscular mycorrhiza establishment, whose expression is down-regulated by NARK in the autoregulated root tissue thereby diminishing subsequent infections. [NF-Y1b]
    [PMID: 23777981]
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G200800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0925390.0BT092539.1 Soybean clone JCVI-FLGm-16A23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014626883.10.0nuclear transcription factor Y subunit A-10 isoform X1
RefseqXP_028215961.10.0nuclear transcription factor Y subunit A-10-like isoform X2
TrEMBLA0A445FJ050.0A0A445FJ05_GLYSO; Nuclear transcription factor Y subunit A-10 isoform A
TrEMBLK7MZC00.0K7MZC0_SOYBN; Uncharacterized protein
STRINGGLYMA19G38800.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37943464
Representative plantOGRP51361122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.21e-54nuclear factor Y, subunit A10
Publications ? help Back to Top
  1. Schaarschmidt S,Gresshoff PM,Hause B
    Analyzing the soybean transcriptome during autoregulation of mycorrhization identifies the transcription factors GmNF-YA1a/b as positive regulators of arbuscular mycorrhization.
    Genome Biol., 2013. 14(6): p. R62
    [PMID:23777981]