PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G192700.2.p
Common NameGLYMA_19G192700, LOC100814842
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRF
Protein Properties Length: 389aa    MW: 42108.8 Da    PI: 7.1381
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G192700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC82.14.7e-26152195144
                  WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                          d+epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr+rsrk++e
  Glyma.19G192700.2.p 152 DPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVE 195
                          79***************************************987 PP
2QLQ51.82.4e-1882118137
                  QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                          s+F+ +Q+q+L+ Q+l+++y++a++ vPpeLlq+i+k
  Glyma.19G192700.2.p  82 SYFSLSQWQELELQALIFRYMLAGAAVPPELLQPIKK 118
                          78*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.4E-1082118IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.50783118IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.7E-1383116IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.808152196IPR014977WRC domain
PfamPF088792.3E-22153195IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MDFHLKEWRN QHESEEQQHS TKMPKLLPES HHQQPSATAL PLFVPEPNSS SKVSTLSDST  60
LAAETETMTT TTTNRLFPRM GSYFSLSQWQ ELELQALIFR YMLAGAAVPP ELLQPIKKSL  120
LHSPHYFLHH PLQHYQPAAL LQSGYWGRGA MDPEPGRCRR TDGKKWRCSR DVVAGQKYCE  180
RHMHRGRNRS RKPVELPTPT SANNCDGGSL GLGASSSSIS SPPLASASLK SPFDLLRLNE  240
RSSGTKNEDE DHVGGDGRSG GGGGHMLRHF FDDWPRSLQD SDNVENNAAG PSLSISMPGN  300
AAAASSDVSL KLSTGYGEDP GPRNENVGLV AEQLQLNWAG GWASSNQVAS MGGPLAEALR  360
SSISTSSPTS VLHHLPRGSG SETSIIST*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.390050.0stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the early stages of leaf development and expression decreases with the maturation of the leaf. {ECO:0000269|PubMed:20023165}.
UniprotTISSUE SPECIFICITY: Strongly expressed in actively growing and developing tissues, such as roots, upper stems, and shoot tips containing the shoot apical meristem (SAM) and flower buds. Also expressed in mature flowers, but weakly expressed in mature stems and leaves. {ECO:0000269|PubMed:12974814}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G192700.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150376e-91AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003553589.10.0growth-regulating factor 3
RefseqXP_028217320.10.0growth-regulating factor 3-like
SwissprotQ8L8A74e-89GRF4_ARATH; Growth-regulating factor 4
TrEMBLA0A445FIJ30.0A0A445FIJ3_GLYSO; Growth-regulating factor 4
TrEMBLI1NAK60.0I1NAK6_SOYBN; Uncharacterized protein
STRINGGLYMA19G37740.30.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52910.13e-79growth-regulating factor 4
Publications ? help Back to Top
  1. Kuijt SJ, et al.
    Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX families of transcription factors.
    Plant Physiol., 2014. 164(4): p. 1952-66
    [PMID:24532604]
  2. Cao Y,Han Y,Jin Q,Lin Y,Cai Y
    Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
    Front Plant Sci, 2016. 7: p. 1750
    [PMID:27933074]