PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.19G190000.1.p | ||||||||
Common Name | GLYMA_19G190000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 453aa MW: 51930.8 Da PI: 6.7963 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 78.1 | 1.4e-24 | 119 | 217 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsesss 77 +Wt+ +v++Li a+ +++++ ++++ +kk++W++vsk m+e+g+ +sp+qC++k+++lnkryk+++++ +k+ ++++++ Glyma.19G190000.1.p 119 KWTDTMVKLLIMAVYYIGDEAGSECtdptkkkasgllQKKGKWKSVSKGMMEKGYYVSPQQCEDKFNDLNKRYKRVNDILGKGtACRVVE 208 7********************9988888889999999**********************************************55999** PP trihelix 78 tcpyfdqle 86 + ++d ++ Glyma.19G190000.1.p 209 NQTLLDTMD 217 999999997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.3E-21 | 117 | 242 | No hit | No description |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 453 aa Download sequence Send to blast |
MEPNALGGGI FPNISSGLLG VENPLQPQQQ QQQPNLQNQR NPHPLHHPQM VSYATHHDTD 60 THHQQQPPQQ PIKHGYNFSA IKSSKSQSTL SDEDEPVFTA EDNSSGDPKR KVSPWHRMKW 120 TDTMVKLLIM AVYYIGDEAG SECTDPTKKK ASGLLQKKGK WKSVSKGMME KGYYVSPQQC 180 EDKFNDLNKR YKRVNDILGK GTACRVVENQ TLLDTMDLSP KMKEEVRKLL NSKHLFFREM 240 CAYHNSCGHN NNCGSTSNVQ QSTEAQPPHQ HQQQQCLHSS ENGVGSLRML KEDEDEDDDS 300 EEFSDEDEEE SGEGGSRGME EDENDVIRRR ARNKGGFGVS SSQMMQQLSG EVSGVLQDGG 360 KSAWEKKQWM KKRVVQLEEQ QVSYQIQAFE LEKQRLKWAR FSSKKEREME KDKLQNERRR 420 LEIERMVLLL RHRELELVNV QQQQHQQQHS ST* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.19G190000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT097368 | 0.0 | BT097368.1 Soybean clone JCVI-FLGm-21N20 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001336160.1 | 0.0 | SHOOT2 protein | ||||
TrEMBL | A0A445FIH6 | 0.0 | A0A445FIH6_GLYSO; Uncharacterized protein | ||||
TrEMBL | I1NAH6 | 0.0 | I1NAH6_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA19G37410.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4820 | 34 | 57 | Representative plant | OGRP9974 | 6 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G10040.1 | 2e-96 | sequence-specific DNA binding transcription factors |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.19G190000.1.p |