PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.19G189700.2.p | ||||||||
Common Name | GLYMA_19G189700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 176aa MW: 20590.3 Da PI: 8.6403 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.8 | 8.9e-19 | 17 | 71 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++t++q+e Le+ F+++ +++ e++ +L+++lgL+ rq+ vWFqNrR+++k Glyma.19G189700.2.p 17 EKKKRLTNNQIELLERSFQEEIKLDPERKMKLSRELGLQPRQIAVWFQNRRTRWK 71 67788*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 118.7 | 3.2e-38 | 17 | 108 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 ekk+rl+++q++lLE+sF+ee kL+perK++l+reLglqprq+avWFqnrR R+k+kqlE+ y++Lk++yd +++e+++L++ev +L++ Glyma.19G189700.2.p 17 EKKKRLTNNQIELLERSFQEEIKLDPERKMKLSRELGLQPRQIAVWFQNRRTRWKAKQLEHLYDMLKHQYDVVSNEKQKLQEEVIKLKAM 106 69**************************************************************************************98 PP HD-ZIP_I/II 91 lk 92 l+ Glyma.19G189700.2.p 107 LS 108 86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.56E-19 | 9 | 75 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.815 | 13 | 73 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.0E-16 | 15 | 77 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.38E-15 | 16 | 74 | No hit | No description |
Pfam | PF00046 | 2.3E-16 | 17 | 71 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.6E-20 | 19 | 81 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 5.2E-5 | 44 | 53 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 48 | 71 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 5.2E-5 | 53 | 69 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 4.6E-9 | 73 | 107 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
METGERSVPA MDRGNKEKKK RLTNNQIELL ERSFQEEIKL DPERKMKLSR ELGLQPRQIA 60 VWFQNRRTRW KAKQLEHLYD MLKHQYDVVS NEKQKLQEEV IKLKAMLSKQ QGYWTQKFGG 120 YTEISGEETV ESTSEGLRGK SNIEHVADQG YCSFAVEDYN TTVSLPHCHW PVVPY* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 65 | 73 | RRTRWKAKQ |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.19G189700.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 3e-94 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003553578.1 | 1e-128 | homeobox-leucine zipper protein ATHB-22 | ||||
Refseq | XP_028216369.1 | 1e-128 | homeobox-leucine zipper protein ATHB-22-like | ||||
Swissprot | Q9LZR0 | 6e-45 | ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51 | ||||
TrEMBL | A0A0R0EPQ3 | 1e-128 | A0A0R0EPQ3_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA19G37380.2 | 1e-128 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03790.1 | 2e-43 | homeobox 51 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.19G189700.2.p |
Publications ? help Back to Top | |||
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