PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.19G189700.1.p | ||||||||
Common Name | GLYMA_19G189700, LOC100807872 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 215aa MW: 25143.4 Da PI: 8.2064 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.3 | 1.3e-18 | 56 | 110 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++t++q+e Le+ F+++ +++ e++ +L+++lgL+ rq+ vWFqNrR+++k Glyma.19G189700.1.p 56 EKKKRLTNNQIELLERSFQEEIKLDPERKMKLSRELGLQPRQIAVWFQNRRTRWK 110 57788*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 118 | 5.3e-38 | 56 | 147 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 ekk+rl+++q++lLE+sF+ee kL+perK++l+reLglqprq+avWFqnrR R+k+kqlE+ y++Lk++yd +++e+++L++ev +L++ Glyma.19G189700.1.p 56 EKKKRLTNNQIELLERSFQEEIKLDPERKMKLSRELGLQPRQIAVWFQNRRTRWKAKQLEHLYDMLKHQYDVVSNEKQKLQEEVIKLKAM 145 69**************************************************************************************98 PP HD-ZIP_I/II 91 lk 92 l+ Glyma.19G189700.1.p 146 LS 147 86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.14E-19 | 45 | 114 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.815 | 52 | 112 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.0E-16 | 54 | 116 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.03E-16 | 55 | 113 | No hit | No description |
Pfam | PF00046 | 5.8E-16 | 56 | 110 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 7.0E-20 | 58 | 120 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 7.0E-5 | 83 | 92 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 87 | 110 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 7.0E-5 | 92 | 108 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 6.4E-9 | 112 | 146 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MDWHHGTKPF VPRPETLSFF YNYDNNNSYP GVEVKQAALM ETGERSVPAM DRGNKEKKKR 60 LTNNQIELLE RSFQEEIKLD PERKMKLSRE LGLQPRQIAV WFQNRRTRWK AKQLEHLYDM 120 LKHQYDVVSN EKQKLQEEVI KLKAMLSKQQ GYWTQKFGGY TEISGEETVE STSEGLRGKS 180 NIEHVADQGY CSFAVEDYNT TVSLPHCHWP VVPY* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 104 | 112 | RRTRWKAKQ |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.19G189700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 1e-102 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003553578.1 | 1e-162 | homeobox-leucine zipper protein ATHB-22 | ||||
Refseq | XP_028216369.1 | 1e-162 | homeobox-leucine zipper protein ATHB-22-like | ||||
Swissprot | Q9LZR0 | 4e-45 | ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51 | ||||
TrEMBL | A0A445FIN0 | 1e-160 | A0A445FIN0_GLYSO; Putative homeobox-leucine zipper protein ATHB-51 | ||||
TrEMBL | K7MZ57 | 1e-160 | K7MZ57_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA19G37380.2 | 1e-161 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3394 | 34 | 66 | Representative plant | OGRP129 | 16 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03790.1 | 7e-43 | homeobox 51 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.19G189700.1.p |
Entrez Gene | 100807872 |
Publications ? help Back to Top | |||
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