PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G186200.1.p
Common NameGLYMA_19G186200
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 362aa    MW: 40042.3 Da    PI: 8.3789
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G186200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.00023264286123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++Cg  Fs+   L  H+r+H
  Glyma.19G186200.1.p 264 HECSICGAEFSSGQALGGHMRKH 286
                          78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.97E-8172195No hitNo description
PfamPF139122.6E-10173197IPR007087Zinc finger, C2H2
SMARTSM003550.14173195IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.349173200IPR007087Zinc finger, C2H2
PROSITE patternPS000280175195IPR007087Zinc finger, C2H2
SuperFamilySSF576671.97E-8259286No hitNo description
Gene3DG3DSA:3.30.160.609.4E-4262286IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.1E-12263287IPR007087Zinc finger, C2H2
PROSITE profilePS501579.723264286IPR007087Zinc finger, C2H2
SMARTSM003550.0087264286IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280266286IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MGLLQSQPNL TRFLASSCLT LHLSLSLSSL HTCNIRLPSL ETQLWQTQNT LLAIRGAIIY  60
ISFHSLHCFF HSLFTMQKQE ELHAVCKDYM QIIKGKRTKR QRLPSPLRLT MSTTCSSLGR  120
SSTDNSVGFD IPTTSNESRN EEEDMANCLI LLAQGHNNTP KPSRTNKGGL YLYECKTCNR  180
CFPSFQALGG HRASHKKYSK ASAEEKQGVA TTFVNYEVDN NNNNHNHDDY CDPTSTPLTL  240
QLSTALYNNS SSIRSTINAK AKVHECSICG AEFSSGQALG GHMRKHRNFL SAPIIGAINI  300
ANGGDGSPKV PEAKKHKDVL NLDLNLPAPE DDHLRESNLF PFQAKEKVIV FSATSLVDCH  360
Y*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.523671e-156root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G186200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9671270.0KC967127.1 Glycine max C2H2-type zinc finger protein 6 (ZFP6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028217850.10.0zinc finger protein ZAT5-like
TrEMBLA0A445FID40.0A0A445FID4_GLYSO; Zinc finger protein ZAT5
TrEMBLK7MZ350.0K7MZ35_SOYBN; Uncharacterized protein
STRINGGLYMA19G37010.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Representative plantOGRP23501035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.14e-48C2H2 family protein