PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G184500.1.p
Common NameGLYMA_19G184500, LOC778084
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 331aa    MW: 36610.8 Da    PI: 8.1372
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G184500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.27.7e-181462148
                         TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                         +g+W++eEd +l+d+++q+G+g +W + ++++g++R++k+c++rw++yl
  Glyma.19G184500.1.p 14 KGPWSPEEDAKLKDYIEQHGTGgNWIALPQKVGLKRCGKSCRLRWLNYL 62
                         79*********************************************97 PP
2Myb_DNA-binding37.74.8e-1269111246
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          g +++ Ed+++  +++  G++ W+ Ia+ ++ gRt++++k++w++
  Glyma.19G184500.1.p  69 GQFSEAEDKIICSLFASIGSR-WSIIASQLP-GRTDNDIKNYWNT 111
                          789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.493966IPR017930Myb domain
SuperFamilySSF466894.6E-2711109IPR009057Homeodomain-like
SMARTSM007171.6E-131364IPR001005SANT/Myb domain
PfamPF002492.3E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-241569IPR009057Homeodomain-like
CDDcd001671.49E-101662No hitNo description
PROSITE profilePS5129416.38267117IPR017930Myb domain
SMARTSM007171.1E-1067115IPR001005SANT/Myb domain
PfamPF002494.5E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.6E-2370117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKDYIE QHGTGGNWIA LPQKVGLKRC GKSCRLRWLN  60
YLRPNIKHGQ FSEAEDKIIC SLFASIGSRW SIIASQLPGR TDNDIKNYWN TKLKKKMMAM  120
NPSLQRKPQQ ITLLSILQSS AYSSPSSFRD SNNISYYHPH GSFSYSSNLL SGNNTSASAN  180
SFFQAQESFI DPTQKCQFKD SSNNSMFLFG GEATATATSC SSSDGSCNNQ ISHVIEPEFG  240
DASFVGGANN NIHPYSGVLE DNNTQKLMMF SNAGGSGSVS GWTDKQNGLL WEQNPLDYGL  300
DEIKQLISTN NSCNNFLFDD KKTQERVTYF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-24141177108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.518150.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G184500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ9028640.0DQ902864.1 Glycine max transcription factor MYBJ7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006604580.10.0transcription factor RAX2
RefseqXP_028217434.10.0transcription factor RAX2-like
TrEMBLA0A445FIE90.0A0A445FIE9_GLYSO; Transcription factor MYB36
TrEMBLI1NAB30.0I1NAB3_SOYBN; Uncharacterized protein
STRINGGLYMA19G36830.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.13e-78myb domain protein 36