PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G181900.1.p
Common NameGLYMA_19G181900, LOC100791442
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARF
Protein Properties Length: 701aa    MW: 77788.5 Da    PI: 8.1651
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G181900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3733.6e-23131232199
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f k+lt+sd+++ g +++p+ +ae++         ++ +   +  +d +g++W++++iyr++++r++lt+GW++Fv+ ++L +gD++vF 
  Glyma.19G181900.1.p 131 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--NILAKDVHGETWKFRHIYRGTPRRHLLTTGWSSFVNHKKLVAGDSIVFL 218
                          89****************************997656666..69999******************************************** PP

                          E-SSSEE..EEEEE-S CS
                   B3  84 ldgrsefelvvkvfrk 99 
                          +   ++  l+v+++r+
  Glyma.19G181900.1.p 219 R--AEKDDLRVGIRRA 232
                          3..477778****996 PP
2Auxin_resp110.12.2e-36294376183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                          aa+ a+++++FevvY+Pras++eF+vk++ v++al+v++++GmRfkm fetedss++++ +Gt+++v+ +dp rWpnS+Wr+L+
  Glyma.19G181900.1.p 294 AATLAANMQPFEVVYYPRASAPEFCVKANLVRAALQVRWCPGMRFKMPFETEDSSRISWfMGTISSVNFADP-RWPNSPWRLLQ 376
                          68899*******************************************************************.*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.7E-38122234IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.19E-29124233IPR015300DNA-binding pseudobarrel domain
CDDcd100178.19E-21129231No hitNo description
SMARTSM010193.5E-21131233IPR003340B3 DNA binding domain
PfamPF023622.2E-21131232IPR003340B3 DNA binding domain
PROSITE profilePS5086312.788131233IPR003340B3 DNA binding domain
PfamPF065071.8E-30294376IPR010525Auxin response factor
PROSITE profilePS5174518.598614694IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 701 aa     Download sequence    Send to blast
MLFQEFAVRT GYCMMESKEK LKEVEKCLDS RLWHACAGGM VQMPVVNAKV FYFPQGHAEH  60
ACGPVDFRVY PKIPPFIQCK VGAIKYMADP ETDEVYVKLR LVPLTRNEGD FEDDAVGGIN  120
GSENKDKSPS FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYSADPPVQN ILAKDVHGET  180
WKFRHIYRGT PRRHLLTTGW SSFVNHKKLV AGDSIVFLRA EKDDLRVGIR RAKRGIGIGG  240
GPEAPAGWNS GGGIRPMPYG GFSAFLREED SQLLRNGLSP NAKGKVRPEA VIEAATLAAN  300
MQPFEVVYYP RASAPEFCVK ANLVRAALQV RWCPGMRFKM PFETEDSSRI SWFMGTISSV  360
NFADPRWPNS PWRLLQVTWD EPELLQNVKR VSPWLVEIVS NMPTIHLSHY STQQKKPRFP  420
QHPDFSFDGQ ISLPAFPSNF LGPSNPFGCL AESTPAGIQG ARHANYGISL SNLHFNKLQS  480
GLFQAGFPPL DHTASPVLRV SSNNAATMQK VGTGDNVSCL LSMSTATQPS KKVDDVKAPQ  540
LVLFGQTILT EQQISLNTSA KTDPTRNNSF DGNADKMCKF SDGFGYALHP QGSSLERLQW  600
YKDQQKETMA SLETGHCKVF MESEDIGRTM DLTMLGSYDE LYRKLADMFG IEKSVVLSHM  660
LYRDTTGAVK HIGDEAFSEF TKTARRLTIL MDSNSDGRGI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-792839751388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.292310.0cotyledon| epicotyl| seed coat
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G181900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006604575.10.0auxin response factor 18
RefseqXP_028218047.10.0auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A445FI850.0A0A445FI85_GLYSO; Auxin response factor
TrEMBLK7MZ140.0K7MZ14_SOYBN; Auxin response factor
STRINGGLYMA19G36571.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Representative plantOGRP5261578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]