PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G180300.1.p
Common NameGLYMA_19G180300, LOC100788799
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 338aa    MW: 38609.6 Da    PI: 6.5257
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G180300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.35e-52131401128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhP+deel+v+yL++kv++++l++ ++i+e+d+yk++Pw+Lp+k+  +e+ewyfF++rd+ky++g r+nra++sgyWkatg+dk
  Glyma.19G180300.1.p  13 LPPGFRFHPSDEELIVHYLRNKVTSSPLPA-SFIAEIDLYKYNPWELPSKALFGEDEWYFFTPRDRKYPNGVRPNRAAASGYWKATGTDK 101
                          79****************************.89***************87778999********************************** PP

                  NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +++++ + + + +kk Lvfykgr pkg+ktdW+mheyrl
  Glyma.19G180300.1.p 102 PIFTScGMKSIAVKKALVFYKGRPPKGSKTDWIMHEYRL 140
                          ****977788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-629167IPR003441NAC domain
PROSITE profilePS5100560.19713167IPR003441NAC domain
PfamPF023656.6E-2714140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MFMDKDANSE IQLPPGFRFH PSDEELIVHY LRNKVTSSPL PASFIAEIDL YKYNPWELPS  60
KALFGEDEWY FFTPRDRKYP NGVRPNRAAA SGYWKATGTD KPIFTSCGMK SIAVKKALVF  120
YKGRPPKGSK TDWIMHEYRL HDSTISNSKQ GGTMRLDEWV LCRVRQKTIS PRSLWEDSNE  180
PIYEPTSYFQ QMSEKSNPEP VKNSLHSEYP MLPYILASKS ALPNSIDMAS SSSFGCNDDV  240
KAYASLHDGN LNNIIIGAQF IAPVAEDLFN PLKRRNIEEN ELDLYAPLNK KLNEEVDVGK  300
QILEKDVNKG YNFNNFDQWT SIIQPQEFNS LAFTKYA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-6811673168Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G180300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2354601e-133AC235460.1 Glycine max strain Williams 82 clone GM_WBb0169H15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003553546.20.0NAC transcription factor 25 isoform X2
RefseqXP_028215986.10.0NAC domain-containing protein 2-like
TrEMBLA0A445FI860.0A0A445FI86_GLYSO; NAC transcription factor 29
TrEMBLK7MZ040.0K7MZ04_SOYBN; Uncharacterized protein
STRINGGLYMA19G36421.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24162981
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.11e-84NAC-like, activated by AP3/PI