PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.19G163800.1.p | ||||||||
Common Name | GLYMA_19G163800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 190aa MW: 21231.6 Da PI: 11.6586 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 34.3 | 5.7e-11 | 65 | 106 | 7 | 51 |
AP2 7 rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 r+++ +g++vAe rdp+ ng r++ g f+tae Aa a+++a+ Glyma.19G163800.1.p 65 RRRP-WGKFVAEKRDPTRNG--VRVWTGAFDTAEAAALAYDQAAF 106 5566.*******99997786..*********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 18.413 | 54 | 118 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.9E-5 | 61 | 72 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.42E-16 | 65 | 119 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 7.1E-22 | 65 | 124 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.9E-7 | 65 | 106 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.5E-21 | 65 | 118 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.9E-5 | 84 | 100 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MAIIHTGLTI LREERRAARF TYSSNLGLPL NQLLQFFEIA LFDSRVKSTF ILLNLRAFNE 60 NQRSRRRPWG KFVAEKRDPT RNGVRVWTGA FDTAEAAALA YDQAAFLTRG VLATLNFSVQ 120 VVMESLQNMG FKASKNDLSP LLALKRMHVM RTKSRANRSG SKKVKRACSN GKLDTTTQNV 180 LVLEGLGPN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-20 | 65 | 121 | 10 | 66 | ATERF1 |
3gcc_A | 5e-20 | 65 | 121 | 10 | 66 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May act as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11950980}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.19G163800.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Weakly induced by Pseudomonas syringae tomato (avirulent avrRpt2 strain), but also by mock inoculation. {ECO:0000269|PubMed:11950980}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT095843 | 1e-142 | BT095843.1 Soybean clone JCVI-FLGm-15O23 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001241445.1 | 6e-69 | ethylene-responsive transcription factor 15-like | ||||
Refseq | XP_028225580.1 | 6e-69 | ethylene-responsive transcription factor 15-like | ||||
Swissprot | Q8VYM0 | 2e-32 | ERF93_ARATH; Ethylene-responsive transcription factor 15 | ||||
TrEMBL | A0A445FHE8 | 1e-136 | A0A445FHE8_GLYSO; Ethylene-responsive transcription factor 15 | ||||
TrEMBL | K7MYP1 | 1e-136 | K7MYP1_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA19G34661.1 | 1e-136 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF311 | 33 | 199 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 3e-21 | ethylene response factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.19G163800.1.p |
Publications ? help Back to Top | |||
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