PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G163300.1.p
Common NameGLYMA_19G163300, LOC100798490
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 757aa    MW: 84069.9 Da    PI: 6.5278
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G163300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.40.00065836201355
                          HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                          R+ i +++ eLrel+P+ a      K s  + Le++++++  Lq
  Glyma.19G163300.1.p 583 RQLIQDRIKELRELVPNgA------KCSIDSLLERTIKHMLFLQ 620
                          67799************77......7777779999999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142158.2E-355166IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000830.00432563620No hitNo description
PROSITE profilePS5088810.772570619IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.9E-4583624IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006468Biological Processprotein phosphorylation
GO:0035556Biological Processintracellular signal transduction
GO:0005829Cellular Componentcytosol
GO:0004674Molecular Functionprotein serine/threonine kinase activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 757 aa     Download sequence    Send to blast
MGTNLHQVLG SLCLNTHWNY AIFWKLKHRA RMILTWEDAY YNNPDDFDSS ENKHCQKTLE  60
QIGCGKFSHS ALGLAVAKMS YHAYSLGEGI VGQVAVTGKH RWICADNQVA SSGLSFEFAD  120
GWQSQFSAGI RTIAVVAVVP LGVVQLGSLN KVIEDMGFVT HIRNLFLSTQ NYSIQCPSQI  180
QGSLKSSSQL DKSKENFSSD IMRTCFYDTQ KSMKSETADV LMPLQCSGTG RNCTPPSACE  240
KMSDNVAKQE GPELYNDESS ILLQSISNMM NVDCQEFEEM KPLYGTKYEG GSSGCKDMRL  300
ESEKNVSSFL NDFVTDNASF NDVICPSEKV RVDSACFPSV FLDTVVCESD KLHYADINQK  360
GAVNFAQPSE ANSQQHIEKS KFHTEPCYKD IPDFQTEPCY KDASHILKFP AGCELHEALG  420
PAFLKGGKCL DWPAQINQEM KSVEMSDEIS TSQLTSESCP EHLLEAMLAN FSHSNNDVNS  480
ELSFCKSKQS AIVSAKNHEA SIHNVHTINS EGYSIDQLSL VREDKHHSLS SSSGICGVMS  540
SKGISSTFHS SNSGQLERSS EPSKNSKKRA RPGESCRPRP RDRQLIQDRI KELRELVPNG  600
AKCSIDSLLE RTIKHMLFLQ SITKHADKLT DFSDTKSKLH HKEADILGSS SYEQGSSWAM  660
EVGGHLKVHS ILVENLSKNG QMLVEMLCEE CNHFLEIAEA IRSLGLTILK GATKAHGEKM  720
WICFVVEGQN KRNVHRLDIL WPLVQILQSK STVYSH*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.237160.0cotyledon| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G163300.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003553489.10.0transcription factor EMB1444
RefseqXP_028218935.10.0transcription factor EMB1444-like
TrEMBLA0A445FH630.0A0A445FH63_GLYSO; Transcription factor EMB1444 isoform A
TrEMBLK7MYP00.0K7MYP0_SOYBN; Uncharacterized protein
STRINGGLYMA19G34621.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50272022
Representative plantOGRP995734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.11e-140conserved peptide upstream open reading frame 7