PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G159600.1.p
Common NameGLYMA_19G159600, LOC100788975
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 461aa    MW: 50512.8 Da    PI: 9.4455
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G159600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.4e-0578100123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++C+k F r  nL+ H r H
  Glyma.19G159600.1.p  78 FVCEICHKGFQRDQNLQLHRRGH 100
                          89*******************88 PP
2zf-C2H212.30.00051154176123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC++C+k +  +s+ k H +t+
  Glyma.19G159600.1.p 154 WKCEKCSKIYAVQSDWKAHSKTC 176
                          58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.59E-677100No hitNo description
Gene3DG3DSA:3.30.160.606.8E-577100IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.04678100IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.63778100IPR007087Zinc finger, C2H2
PROSITE patternPS00028080100IPR007087Zinc finger, C2H2
SMARTSM00355210119149IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.3E-4142175IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.59E-6149174No hitNo description
SMARTSM00355170154174IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MFPTAISNST SLSEDASVSS GTKVQDLGGL NPWVSNISPQ QQQQPQKIKK KRSLPGNPDP  60
DAEVIALSPK TLLATNRFVC EICHKGFQRD QNLQLHRRGH NLPWKLKQRS SKEVKKKAYV  120
CPEPSCVHHD PSRALGDLTG IKKHFCRKHG EKKWKCEKCS KIYAVQSDWK AHSKTCGTRE  180
YRCDCGILFS RKDSFITHRA FCDALAEESA RLSANQLAAV ATTTSNPFQS LHLFQTQQQN  240
FQNHQISSFN QWDSSQENPN PTNIIATTSL HIKPESQTFH NPTLSSLLQQ QQPTNNKGMI  300
ASTFGNLHVA TQASATSAYM SATALLQKAA TVGAAAITGP VGPQQRVTGH VNHVTHHLGS  360
GEFGIGTVSQ LDPVVAVPDN NYMRTTFKGD RLTRDFLGLT ADATGGAVDV STNVKDMLTF  420
AGGVEYHQPH RQHHHHALLK PQQGFGFLGT ATAPETWGNC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-35150214367Zinc finger protein JACKDAW
5b3h_F3e-35150214367Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G159600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0933641e-177BT093364.1 Soybean clone JCVI-FLGm-24G11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003553472.10.0protein indeterminate-domain 12
RefseqXP_028217249.10.0protein indeterminate-domain 12-like
SwissprotO227591e-127IDD12_ARATH; Protein indeterminate-domain 12
TrEMBLA0A445FH250.0A0A445FH25_GLYSO; Protein indeterminate-domain 12
TrEMBLK7MYM40.0K7MYM4_SOYBN; Uncharacterized protein
STRINGGLYMA19G34220.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-110indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]