PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.19G159500.1.p | ||||||||
Common Name | GLYMA_19G159500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | HSF | ||||||||
Protein Properties | Length: 371aa MW: 42387.4 Da PI: 5.2745 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 110.8 | 9.5e-35 | 49 | 140 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 Fl+k+y+ +ed+++++++sw++ g sfvv+d++ f++++Lp+yFkh+nf+SFvRQLn+YgF+k++ ++ weF+++ F +g++ Glyma.19G159500.1.p 49 FLTKTYDAVEDPTTSHIVSWNRGGASFVVWDPHAFSRDLLPRYFKHNNFSSFVRQLNTYGFRKIDPDR---------WEFANEGFLRGHR 129 9****************************************************************999.........************* PP XXXXXXXXXXX CS HSF_DNA-bind 92 ellekikrkks 102 ++l +i+r+k+ Glyma.19G159500.1.p 130 HQLASIRRRKQ 140 *********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.1E-37 | 43 | 132 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 4.9E-34 | 45 | 138 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 4.0E-57 | 45 | 138 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 3.9E-31 | 49 | 138 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.9E-19 | 49 | 72 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.9E-19 | 87 | 99 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 88 | 112 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.9E-19 | 100 | 112 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence Send to blast |
MNYLYPVKEE YLESPPPSSS SPTTGVDESA MVPPPRPMEG LHEIGPPPFL TKTYDAVEDP 60 TTSHIVSWNR GGASFVVWDP HAFSRDLLPR YFKHNNFSSF VRQLNTYGFR KIDPDRWEFA 120 NEGFLRGHRH QLASIRRRKQ PSRPYSSSSS SQQAQGHCVE VGRFGLDEEV DRLRRDKHVL 180 MMELVRLRQQ QLNTRSYLQA MEERLRGTEI KQQQMMAFLA RALKNPTFIQ QLLQQKEKRK 240 ELEEAMSKKR RRPIEGGPSG VGEPSSGGEE GRSSVKVEPL VLGEYGFGVS ELEVLAMEMQ 300 GYGRGRREQE EEPEALESQE RLEKELDEGF WEELFSEGFE GELDIPTSQD QDEDVSVLAN 360 RFGYLGSSPK * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 2e-22 | 47 | 138 | 18 | 120 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 237 | 251 | KRKELEEAMSKKRRR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.30204 | 0.0 | leaf| seed coat |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.19G159500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025982751.1 | 0.0 | heat stress transcription factor A-7a | ||||
Refseq | XP_025982752.1 | 0.0 | heat stress transcription factor A-7a | ||||
Swissprot | Q9LUH8 | 1e-124 | HFA6B_ARATH; Heat stress transcription factor A-6b | ||||
TrEMBL | A0A445FH88 | 0.0 | A0A445FH88_GLYSO; Heat stress transcription factor A-6b | ||||
TrEMBL | I1N9K5 | 0.0 | I1N9K5_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA19G34210.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1100 | 34 | 105 | Representative plant | OGRP96 | 17 | 233 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22830.1 | 2e-94 | heat shock transcription factor A6B |
Link Out ? help Back to Top | |
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Phytozome | Glyma.19G159500.1.p |