PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G147100.1.p
Common NameGLYMA_19G147100, LOC100803981
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 296aa    MW: 31102.4 Da    PI: 9.5952
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G147100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.42.9e-09101126227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          kt++C+ f     Ck+Gd+C+FaHg+
  Glyma.19G147100.1.p 101 KTRICNKFNTAEGCKFGDKCHFAHGE 126
                          8***********************96 PP
2zf-CCCH345.1e-11262286126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          +kt+lC +f + G C +GdrC+FaHg
  Glyma.19G147100.1.p 262 FKTKLCENFTK-GSCTFGDRCHFAHG 286
                          69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.83461IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.0423462IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.02E-53560IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-73659IPR000571Zinc finger, CCCH-type
PfamPF146081.64259No hitNo description
Gene3DG3DSA:4.10.1000.105.2E-1497129IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-898130IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.6199127IPR000571Zinc finger, CCCH-type
SMARTSM003566.6E-499126IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-6101126IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.29E-15158240IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.5E-16167236IPR004088K Homology domain, type 1
SMARTSM003221.8E-12167237IPR004087K Homology domain
PROSITE profilePS5008415.158168232IPR004088K Homology domain, type 1
CDDcd001051.89E-15170233No hitNo description
PfamPF000135.8E-12170233IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.104.3E-16258292IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-8260291IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-7261287IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.427261288IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-8262286IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MDTRKRGRPE PGFSLNGGFK KSKQEMESLS TGVGSKSKPC TKFFSTAGCP FGEGCHFLHY  60
VPGGYNAVAH MMNLTPAAPP ASRNVAALPP VPNGSAPPAV KTRICNKFNT AEGCKFGDKC  120
HFAHGEWELG KHIAPSFDDH RTMGPTGVGR LAGRMEPPPG PAASFGANAT AKISVEASLA  180
GAIIGKGGVN SKQICRQTGA KLSIREHESD PNLRNIELEG SFEQIKEASN MVKDLLLTLQ  240
MSAPPKTTPG VPGAPASHGS NFKTKLCENF TKGSCTFGDR CHFAHGAAEL RKSGV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.547920.0cotyledon| leaf| root| seed coat| somatic embryo| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G147100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0944670.0BT094467.1 Soybean clone JCVI-FLGm-18P9 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001242454.20.0KH and zinc finger (CCCH type) domain-containing protein
RefseqXP_006603730.10.0KH and zinc finger (CCCH type) domain-containing protein isoform X1
RefseqXP_028218825.10.0zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-112C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A0B2R2B20.0A0A0B2R2B2_GLYSO; Zinc finger CCCH domain-containing protein 14
TrEMBLI1N9790.0I1N979_SOYBN; Uncharacterized protein
STRINGGLYMA19G32910.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Representative plantOGRP10261756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.11e-95C3H family protein