PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.19G146600.1.p

Common Name

GLYMA_19G146600, Glyma19g32850.1, LOC100527766

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

G2-like

Protein Properties

Length: 402aa MW: 45202.8 Da PI: 8.5783

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.19G146600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.3	1.2e-31	251	305	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt++LHe+Fve+v++LGG+e+AtPk+il++m+ +gLt+ hvkSHLQkYR+ Glyma.19G146600.1.p 251 KTRIRWTKDLHEKFVECVNRLGGAEQATPKAILKMMNTDGLTIFHVKSHLQKYRI 305 68****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.77	248	308	IPR017930	Myb domain
SuperFamily	SSF46689	1.97E-17	249	305	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.0E-28	249	306	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.0E-23	251	306	IPR006447	Myb domain, plants
Pfam	PF00249	1.4E-9	255	304	IPR001005	SANT/Myb domain
Pfam	PF14379	2.8E-19	336	382	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence Send to blast
MNENKIDWGG LIQQSHGLSG DFNSEFGNRY CQYFDIRQAW NMGPLSMFGG EATDHELPNI 60 GHVKSSGTIM SRFESPASAF YATENCMGFA EYDCQVGVHS LSSQLCKIND LEFPLYQSFS 120 RENLFLDSAN QSETNFDLSN TLQSIVKSQL NSGNQCRRSP EKSNQISSGN FPSSKFLPIE 180 QQKLFVDGLI RGSSFLKKGN QDHMVGHGSF NLSVPQLRFS SQIEKLYPTL SAGSVSTIGN 240 SASNGAIVSS KTRIRWTKDL HEKFVECVNR LGGAEQATPK AILKMMNTDG LTIFHVKSHL 300 QKYRIAKFIP EPSHGKSDKR THTKDVHHLD VKTGLQIREA LKLQLDAQRR LHEQLEIQRK 360 LQLRIEEQGR ELKKMFDQQQ KTNNNLPNTQ NSATDETTIN H*

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence Send to blast

MNENKIDWGG LIQQSHGLSG DFNSEFGNRY CQYFDIRQAW NMGPLSMFGG EATDHELPNI  60
GHVKSSGTIM SRFESPASAF YATENCMGFA EYDCQVGVHS LSSQLCKIND LEFPLYQSFS  120
RENLFLDSAN QSETNFDLSN TLQSIVKSQL NSGNQCRRSP EKSNQISSGN FPSSKFLPIE  180
QQKLFVDGLI RGSSFLKKGN QDHMVGHGSF NLSVPQLRFS SQIEKLYPTL SAGSVSTIGN  240
SASNGAIVSS KTRIRWTKDL HEKFVECVNR LGGAEQATPK AILKMMNTDG LTIFHVKSHL  300
QKYRIAKFIP EPSHGKSDKR THTKDVHHLD VKTGLQIREA LKLQLDAQRR LHEQLEIQRK  360
LQLRIEEQGR ELKKMFDQQQ KTNNNLPNTQ NSATDETTIN H*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-22	251	308	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-22	251	308	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-22	251	308	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-22	251	308	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-22	251	308	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-22	251	308	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-22	251	308	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-22	251	308	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-22	251	308	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-22	251	308	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-22	251	308	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-22	251	308	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.24839	0.0	cotyledon\| root\| seed coat

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.19G146600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT031205	0.0	KT031205.1 Glycine max clone HN_CCL_162 MYB/HD-like transcription factor (Glyma19g32850.1) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001237074.2	0.0	MYB-CC domain-containing transcription factor PHR31
Refseq	XP_028216362.1	0.0	uncharacterized protein LOC114398374
TrEMBL	A0A0B2QXV3	0.0	A0A0B2QXV3_GLYSO; Myb family transcription factor APL
TrEMBL	I1N974	0.0	I1N974_SOYBN; MYB/HD-like transcription factor
STRING	GLYMA19G32850.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3740	34	65
Representative plant	OGRP78	17	262

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.1	4e-68	G2-like family protein

Link Out ? help Back to Top
Phytozome	Glyma.19G146600.1.p
Entrez Gene	100527766

Publications ? help Back to Top
Chai C, et al. Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance. BMC Genomics, 2015. 16: p. 596 [PMID:26268547]