PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.19G122500.1.p | ||||||||
Common Name | GLYMA_19G122500, LOC100804332 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | LBD | ||||||||
Protein Properties | Length: 240aa MW: 25772.8 Da PI: 6.8545 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126.7 | 1.1e-39 | 45 | 146 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C aCk+lrrkC +C++apyf+ +q ++kfa+vhk+FGasnv+kll+++p ++r++a++s+ yeA+ar++dPvyG+v++il+lqqq+ + Glyma.19G122500.1.p 45 PCGACKFLRRKCIGGCIFAPYFCTDQgAAKFAAVHKVFGASNVSKLLSNIPANRRHEAATSISYEAQARLSDPVYGCVSTILALQQQVVS 134 7*************************89************************************************************** PP DUF260 90 lkaelallkeel 101 l+aela+l+++l Glyma.19G122500.1.p 135 LQAELAMLQTQL 146 *******99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.565 | 44 | 146 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 9.3E-39 | 45 | 143 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MAEPQGGIGG DSGASGSKRR STVSKRGMVA QTQDEAIVGS SPATPCGACK FLRRKCIGGC 60 IFAPYFCTDQ GAAKFAAVHK VFGASNVSKL LSNIPANRRH EAATSISYEA QARLSDPVYG 120 CVSTILALQQ QVVSLQAELA MLQTQLMNSK FFYTSALQTT QLHQPNMNAA ALHPAYSNNS 180 CGSTNLLNLS NFNNTPSFDL AMDTTPSSHS LEPLQLTRLS QYEEEEEEES KTQQTFDHH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-38 | 45 | 148 | 11 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-38 | 45 | 148 | 11 | 113 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.19G122500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 1e-108 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003553372.1 | 1e-179 | LOB domain-containing protein 20 | ||||
Swissprot | Q9SRV3 | 3e-67 | LBD20_ARATH; LOB domain-containing protein 20 | ||||
TrEMBL | K7MY04 | 1e-178 | K7MY04_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA19G30200.2 | 1e-179 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7715 | 31 | 46 | Representative plant | OGRP405 | 15 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03760.1 | 5e-52 | LOB domain-containing protein 20 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.19G122500.1.p |
Entrez Gene | 100804332 |