PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.19G118500.1.p | ||||||||
Common Name | GLYMA_19G118500, LOC100791795 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 379aa MW: 41716.5 Da PI: 8.3764 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.1 | 8.3e-18 | 108 | 153 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ede+l+++v+q+G+ +W++Ia+ + gR++k+c++rw++ Glyma.19G118500.1.p 108 RGHWRPAEDERLKELVAQYGPQNWNLIAENLE-GRSGKSCRLRWFNQ 153 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 55.7 | 1.1e-17 | 160 | 203 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++++eE+e+l+ a++++G++ W+ Iar ++ gRt++ +k++w+ Glyma.19G118500.1.p 160 RRSFSEEEEERLITAHRMYGNK-WAMIARLFP-GRTDNAVKNHWHV 203 6789******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.96 | 103 | 154 | IPR017930 | Myb domain |
SMART | SM00717 | 8.0E-15 | 107 | 156 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-16 | 108 | 153 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.36E-28 | 108 | 201 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.7E-26 | 109 | 161 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.15E-14 | 111 | 152 | No hit | No description |
PROSITE profile | PS51294 | 26.867 | 155 | 209 | IPR017930 | Myb domain |
SMART | SM00717 | 3.3E-15 | 159 | 207 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-14 | 160 | 202 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-20 | 162 | 207 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.28E-7 | 171 | 202 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 379 aa Download sequence Send to blast |
MSSSQHLNNV GEGSNRDMSF FPPSSLYVGS SQTPPLSMGH ENGVEGSKPE MGLQIFGSTV 60 FQPSECRGTK RASDEEGVEI ENRNLCLKLA DEAQAKSSAS GKIKLCARGH WRPAEDERLK 120 ELVAQYGPQN WNLIAENLEG RSGKSCRLRW FNQLDPRINR RSFSEEEEER LITAHRMYGN 180 KWAMIARLFP GRTDNAVKNH WHVIMARRQR EHSSSVYRRR KLVVNETLPK GLDLTLSNNA 240 GSESTISSTI DESASTCTNL SLTPSSAKVT PPFRRLFDHP GPSQNHQAFG SLIGQARGDV 300 SFNKFCGASW KGVAYKKADQ VGKLKGVDQS NFSDANSEVS VSESVATNRS NVSISEESET 360 VGDKINMPFI DFLGVGAT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 3e-33 | 108 | 208 | 4 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 3e-33 | 108 | 208 | 4 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: During anther development, expressed in anther vacuolar tissue from stage 9 to stage 13. {ECO:0000269|PubMed:20305120}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in root vascular tissue, primordia of lateral roots, leaf collar, and veins of lemma, palea and pistil. {ECO:0000269|PubMed:20305120}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for sugar partitioning from leaves to anthers during male reproductive development. Required for the production of functional pollen grains. Binds to the promoter of the anther-specific sugar transporter MST8 and regulates its expression. Regulates the expression of genes involved in sugar partitioning in flower, such as the sugar transporter SUT3, the invertase INV4, the UDP-glucose pyrophosphorylase UGP2 and the starch synthase WAXY. {ECO:0000269|PubMed:20305120}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.19G118500.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding. {ECO:0000269|PubMed:20305120}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031183 | 0.0 | KT031183.1 Glycine max clone HN_CCL_37 MYB/HD-like transcription factor (Glyma03g00980.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003553355.1 | 0.0 | transcription factor CSA | ||||
Refseq | XP_028216213.1 | 0.0 | transcription factor CSA-like | ||||
Swissprot | Q5NBM8 | 2e-72 | CSA_ORYSJ; Transcription factor CSA | ||||
TrEMBL | A0A445FFD5 | 0.0 | A0A445FFD5_GLYSO; Transcription factor CSA isoform A | ||||
TrEMBL | I1N8F4 | 0.0 | I1N8F4_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA19G29670.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF230 | 34 | 243 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26780.1 | 2e-66 | myb domain protein 117 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.19G118500.1.p |
Entrez Gene | 100791795 |