PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G109100.1.p
Common NameGLYMA_19G109100, LOC100784372
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 406aa    MW: 46038.1 Da    PI: 6.8454
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G109100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM185.89.6e-58161431129
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdee++++yL++kv+++++++  +i e+d++k+ePwdLpkk+k +ekewyfF+++d+ky+tg r+nrat+sgyWkatgkdk
  Glyma.19G109100.1.p  16 LPPGFRFHPTDEEIITYYLTEKVRNSSFSA-IAIGEADLNKCEPWDLPKKAKIGEKEWYFFCQKDRKYPTGMRTNRATESGYWKATGKDK 104
                          79*************************999.88***************99999************************************* PP

                  NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                          e+++ kg+lvg+kktLvfy+grapkgekt+Wvmhe+rle
  Glyma.19G109100.1.p 105 EIYKGKGNLVGMKKTLVFYRGRAPKGEKTNWVMHEFRLE 143
                          ************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.36E-6213168IPR003441NAC domain
PROSITE profilePS5100558.59416167IPR003441NAC domain
PfamPF023651.8E-2917142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MEEPIVVNKG EEPLDLPPGF RFHPTDEEII TYYLTEKVRN SSFSAIAIGE ADLNKCEPWD  60
LPKKAKIGEK EWYFFCQKDR KYPTGMRTNR ATESGYWKAT GKDKEIYKGK GNLVGMKKTL  120
VFYRGRAPKG EKTNWVMHEF RLEGKFASYN LPKAAKDEWV VSRVFHKNTD VKKSSTPGLL  180
RINSIGDDLL DYSSLPPLMD PPYGNTNTTN NTNPLSSSTK SQSEGYYLPS FSINNHQQQL  240
LIKPEDHHHH RSYNEIPTIN YTSNQANLSN NVNAMGNNTL SQPLNMFSAD YYVHQNRIKS  300
SIMPSVAGSD FVNNNNNHHE AILRAFAAKN NEHIQCKMEQ FSSNHSQDTG LSNDRNTTDT  360
SSVVSKQQDN NMGRNNNRAL YEDLEGPSSV APLSDLECLQ WDDDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-521417315171NO APICAL MERISTEM PROTEIN
1ut4_B4e-521417315171NO APICAL MERISTEM PROTEIN
1ut7_A4e-521417315171NO APICAL MERISTEM PROTEIN
1ut7_B4e-521417315171NO APICAL MERISTEM PROTEIN
3swm_A4e-521417318174NAC domain-containing protein 19
3swm_B4e-521417318174NAC domain-containing protein 19
3swm_C4e-521417318174NAC domain-containing protein 19
3swm_D4e-521417318174NAC domain-containing protein 19
3swp_A4e-521417318174NAC domain-containing protein 19
3swp_B4e-521417318174NAC domain-containing protein 19
3swp_C4e-521417318174NAC domain-containing protein 19
3swp_D4e-521417318174NAC domain-containing protein 19
4dul_A4e-521417315171NAC domain-containing protein 19
4dul_B4e-521417315171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.572560.0leaf| root
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00518DAPTransfer from AT5G18270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G109100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0312700.0KT031270.1 Glycine max clone HN_CCL_56 NAC transcription factor (Glyma16g04720.1_like1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003554001.10.0NAC domain-containing protein 87
RefseqXP_028216105.10.0NAC domain-containing protein 87-like
SwissprotQ9FK441e-114NAC87_ARATH; NAC domain-containing protein 87
TrEMBLA0A445FEU80.0A0A445FEU8_GLYSO; NAC domain-containing protein 87
TrEMBLK7MXS20.0K7MXS2_SOYBN; Uncharacterized protein
STRINGGLYMA19G28515.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40934171
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.11e-105Arabidopsis NAC domain containing protein 87
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]