PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G108800.1.p
Common NameGLYMA_19G108800
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 337aa    MW: 37864.8 Da    PI: 8.8498
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G108800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.92e-5381381128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdeel+ +yL kkv++ +l++ ++i+evdiyk++PwdLp+k++ +ekewyfFs+rd+ky++g r+nra++sgyWkatg+dk
  Glyma.19G108800.1.p   8 LPPGFRFHPTDEELILHYLSKKVASIPLPV-SIIAEVDIYKLDPWDLPAKATFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDK 96 
                          79****************************.89***************988899************************************ PP

                  NAM  91 evlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +++++     +e vg+kk Lvfykgr +kg+kt+W+mheyrl
  Glyma.19G108800.1.p  97 TIVTSlqggAQESVGVKKALVFYKGRPSKGVKTNWIMHEYRL 138
                          ****999877788***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-625150IPR003441NAC domain
PROSITE profilePS5100554.5618161IPR003441NAC domain
PfamPF023657.7E-289138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MGNPESNLPP GFRFHPTDEE LILHYLSKKV ASIPLPVSII AEVDIYKLDP WDLPAKATFG  60
EKEWYFFSPR DRKYPNGARP NRAAASGYWK ATGTDKTIVT SLQGGAQESV GVKKALVFYK  120
GRPSKGVKTN WIMHEYRLLD DWVLCRIYKK SKHPLTSTEA SIGVGDVDQA EEHVFKETLL  180
PISKSPTPPP QNTLISQKSV SFSNLLDAMD YSILSSFLSE NHTTHPPGVG SSTGFNTGNL  240
DQQPSPIDNS NGYMFQKNNP QLNPSVSNME NMMRPKRQVS NMDEETLYPS KKYLSSSCNF  300
PTNINNQYEN PQWNYLMKQS LLNQRLMLGP HLQFQG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-69715016165NO APICAL MERISTEM PROTEIN
1ut4_B1e-69715016165NO APICAL MERISTEM PROTEIN
1ut7_A1e-69715016165NO APICAL MERISTEM PROTEIN
1ut7_B1e-69715016165NO APICAL MERISTEM PROTEIN
4dul_A1e-69715016165NAC domain-containing protein 19
4dul_B1e-69715016165NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.333460.0cotyledon| flower| hypocotyl| leaf| seed coat| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:24363315}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G108800.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269|PubMed:24363315, ECO:0000269|PubMed:24659488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0118070.0AP011807.1 Glycine max genomic DNA, BAC clone: WBb174H15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001236142.10.0transcriptional factor NAC11
RefseqXP_028219191.10.0NAC transcription factor 47-like
SwissprotQ84TD61e-101NAC47_ARATH; NAC transcription factor 47
TrEMBLK7MXS00.0K7MXS0_SOYBN; Uncharacterized protein
STRINGGLYMA19G28476.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66212750
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.21e-106NAC domain containing protein 47
Publications ? help Back to Top
  1. Hofmann NR
    A NAC transcription factor for flooding: SHYG helps plants keep their leaves in the air.
    Plant Cell, 2013. 25(12): p. 4771
    [PMID:24363314]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]