PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G104200.1.p
Common NameGLYMA_19G104200
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 342aa    MW: 38072.6 Da    PI: 6.116
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G104200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.22.6e-20125174255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae Aa+a++aa++k++g
  Glyma.19G104200.1.p 125 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEAAAAAYDAAALKFKG 174
                          7********.**********94....45************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.0E-32124183IPR001471AP2/ERF domain
SMARTSM003802.2E-37125188IPR001471AP2/ERF domain
CDDcd000181.29E-22125184No hitNo description
PfamPF008471.7E-13125174IPR001471AP2/ERF domain
PROSITE profilePS5103225.264125182IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-22125183IPR016177DNA-binding domain
PRINTSPR003672.2E-11126137IPR001471AP2/ERF domain
PRINTSPR003672.2E-11148164IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MANAILNPAP PSFGVEEDES MHELWLWLHE NRRSSCENCL AFATTLAFSS CENCQNPLDE  60
LLRRLSQGEE ASQFSFIHPI NNTSDDSTPS TPIPQYGQIS NSCLIETQDP SQQPLNQGGN  120
GRKRHYRGVR QRPWGKWAAE IRDPKKAARV WLGTFDTAEA AAAAYDAAAL KFKGSKAKLN  180
FPEHVLVPPP PISSSPYNNN HQNNHSYCYG SSALAPPPPL PLPSSQHVYD QPQQPLLSSS  240
SQEEGFPNLM QYAQLLWSRD DDDLQRVASG LHHQQHHHHH HHPNEAFYDS SSSTLFSSSS  300
TTSSMAVSDQ QQIGDDTSTA PKRGEYYDSC FFRGNDFHDK N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-25124185163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G104200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0931400.0BT093140.1 Soybean clone JCVI-FLGm-22C2 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014627150.11e-149AP2-like ethylene-responsive transcription factor BBM1
TrEMBLK7MXN60.0K7MXN6_SOYBN; Uncharacterized protein
STRINGGLYMA19G27790.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98534115
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.14e-31ERF family protein