PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.19G084000.1.p | ||||||||
Common Name | GLYMA_19G084000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB_related | ||||||||
Protein Properties | Length: 87aa MW: 9993.55 Da PI: 10.4607 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.9 | 5.3e-09 | 11 | 50 | 9 | 48 |
HHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 9 dellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 + +lv +++++G+g+W+++ ++ g R+ k+c++r +yl Glyma.19G084000.1.p 11 HIILVSYIQEHGPGNWRAVLAKTGFSRCSKSCRLRSTNYL 50 899*********************99*********98886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.184 | 1 | 54 | IPR017930 | Myb domain |
Pfam | PF00249 | 2.2E-8 | 11 | 50 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.16E-15 | 12 | 81 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-11 | 13 | 54 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.83E-4 | 13 | 50 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-7 | 55 | 81 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 87 aa Download sequence Send to blast |
MCIKQRESRQ HIILVSYIQE HGPGNWRAVL AKTGFSRCSK SCRLRSTNYL RPGIKQGNFS 60 EQEEKMIIHL QDLLGNRYKS IFQAPT* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.20427 | 8e-93 | leaf| seed coat| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in flowers, leaves and weakly in seed pods. {ECO:0000269|PubMed:1840903}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.19G084000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT093784 | 2e-90 | BT093784.1 Soybean clone JCVI-FLGm-24M4 unknown mRNA. | |||
GenBank | FJ768022 | 2e-90 | FJ768022.1 Glycine max transcription factor MYB392 mRNA, complete cds. | |||
GenBank | KT031204 | 2e-90 | KT031204.1 Glycine max clone HN_CCL_69 MYB/HD-like transcription factor (Glyma18g49360.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028216681.1 | 9e-51 | transcription factor MYB30-like | ||||
Swissprot | P81392 | 5e-35 | MYB06_ANTMA; Myb-related protein 306 | ||||
TrEMBL | K7MXA3 | 5e-58 | K7MXA3_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA19G24531.1 | 8e-59 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28910.1 | 4e-37 | myb domain protein 30 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.19G084000.1.p |
Publications ? help Back to Top | |||
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