PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.19G083700.1.p | ||||||||
Common Name | GLYMA_19G083700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB_related | ||||||||
Protein Properties | Length: 93aa MW: 10676.4 Da PI: 10.5335 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.5 | 1.2e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +grWTteE+e+l +++ G g+W++ ++ g+ R++++c++rw +yl Glyma.19G083700.1.p 14 KGRWTTEEEEILTKYIMANGEGSWRSLPKNTGLLRCGNSCRLRWINYL 61 79******************************99************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.2E-22 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.518 | 9 | 65 | IPR017930 | Myb domain |
SMART | SM00717 | 6.7E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.13E-20 | 15 | 91 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.03E-8 | 16 | 61 | No hit | No description |
PROSITE profile | PS50090 | 3.926 | 62 | 92 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 4.6E-7 | 65 | 91 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 93 aa Download sequence Send to blast |
MVRARCCEKV GLKKGRWTTE EEEILTKYIM ANGEGSWRSL PKNTGLLRCG NSCRLRWINY 60 LRADLKRGTF SVEEESTILK LHASFGSRLR RI* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor postulated to regulate the biosynthetic pathway of a flavonoid-derived pigment in certain floral tissues. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.19G083700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT094295 | 1e-76 | BT094295.1 Soybean clone JCVI-FLGm-18O14 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003553664.1 | 2e-52 | transcription factor MYB111 | ||||
Refseq | XP_028217761.1 | 2e-52 | transcription factor MYB111-like | ||||
Swissprot | P27898 | 2e-40 | MYBP_MAIZE; Myb-related protein P | ||||
TrEMBL | A0A0B2P2M1 | 1e-59 | A0A0B2P2M1_GLYSO; Myb-related protein P | ||||
TrEMBL | K7MXA0 | 1e-59 | K7MXA0_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA19G24451.1 | 2e-60 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47460.1 | 1e-42 | myb domain protein 12 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.19G083700.1.p |