PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.19G062000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 407aa MW: 46589.4 Da PI: 9.7223 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.6 | 1.1e-16 | 168 | 214 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd lv++vk++G + W+ Iar ++ gR +kqc++rw+++l Glyma.19G062000.1.p 168 KGQWSAEEDRVLVQLVKRFGLKKWSHIARLLN-GRVGKQCRERWHNHL 214 799*****************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 52.1 | 1.5e-16 | 220 | 262 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +W +eEd +l++a+k G++ W+ Iar+m+ gRt++ +k++w+ Glyma.19G062000.1.p 220 KESWNEEEDRILIEAHKGIGNR-WAEIARRMP-GRTENTIKNHWN 262 578*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 27.203 | 163 | 218 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.37E-30 | 165 | 261 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.2E-15 | 167 | 216 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-26 | 169 | 222 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 3.6E-18 | 171 | 228 | No hit | No description |
CDD | cd00167 | 1.03E-13 | 171 | 214 | No hit | No description |
PROSITE profile | PS51294 | 19.44 | 219 | 269 | IPR017930 | Myb domain |
SMART | SM00717 | 4.1E-15 | 219 | 267 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.53E-11 | 222 | 265 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-19 | 223 | 267 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 407 aa Download sequence Send to blast |
MEFDPIFPAE KIHYLSSIFS GIKPEIPAFI PMSQENNNNT TFCMYQNNFK NHDNHHPTAN 60 FFSEGFNSSI LTPLFSLSSS SGDSSYPNEC LKGSFANDNN FYHPIMPYAQ NNTQNEPMHG 120 PNRAIWDFSQ KIPLRCSSAG AGATSQPHQM QRRSNGEIQH KNMTNIIKGQ WSAEEDRVLV 180 QLVKRFGLKK WSHIARLLNG RVGKQCRERW HNHLRPNIRK ESWNEEEDRI LIEAHKGIGN 240 RWAEIARRMP GRTENTIKNH WNATKRRLNA KRLRNKRRSS KGPTLLESYI RQVTAEEDAE 300 KELIKNSMNN MNLKGERSSN TTNTKTKYPR LFRVRYDSSE GGFSSEEDEV GRGVQQLHGG 360 GGAYVPTMVN AAVEDGTMGY DVAMEMAPEV QMKKEMDLME MIYRKA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-44 | 163 | 267 | 2 | 106 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.19G062000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003555068.1 | 0.0 | myb-like protein A isoform X2 | ||||
TrEMBL | A0A0R0ESD1 | 0.0 | A0A0R0ESD1_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA19G13923.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1570 | 31 | 96 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18770.1 | 3e-56 | myb domain protein 98 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.19G062000.1.p |