PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G056400.4.p
Common NameGLYMA_19G056400
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 397aa    MW: 44169.9 Da    PI: 4.7645
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G056400.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM96.25.2e-30541962128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkk....leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra...... 77 
                          p G++F+P+d el+ e+L++k+   +    + ++e+i++++    i++++P++Lp  +k++ + ++fF+++ ++yatg+rk+r+      
  Glyma.19G056400.4.p  54 PLGVKFDPSDVELL-EHLAAKCGIGNtqqhMFINEFIPTLEgdqgICYTHPENLP-GAKKDGSYVHFFHRTTNAYATGQRKRRKihhqqg 141
                          89************.999999877663444223334554423445**********.556778899******************8677777 PP

                  NAM  78 ..tksgyWkatgkdkevlskkgelvglkktLvfykgrapkge...ktdWvmheyrl 128
                             ++ +W++tgk+k++++ +g+++g kk++v+y  ++++g+   k++Wvmh+y+l
  Glyma.19G056400.4.p 142 ltEEHVRWHKTGKTKAIIE-DGAHKGFKKIMVLYVRSSENGSrsyKSNWVMHQYHL 196
                          7444788************.999***********655555544449********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.4E-3537215IPR003441NAC domain
PROSITE profilePS5100528.11353215IPR003441NAC domain
PfamPF023652.2E-1254196IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MSWLIDIGGF AKKVKSTTLS SADQIKDCGA YRECPNCSYH IDNSDVSTEW PGFPLGVKFD  60
PSDVELLEHL AAKCGIGNTQ QHMFINEFIP TLEGDQGICY THPENLPGAK KDGSYVHFFH  120
RTTNAYATGQ RKRRKIHHQQ GLTEEHVRWH KTGKTKAIIE DGAHKGFKKI MVLYVRSSEN  180
GSRSYKSNWV MHQYHLGTVE EEKEGEYVVS KIFCQQQKQT EKNEGNPMAE DPDNIISRTG  240
PRTPKPNPPN PPRAGKSVDC DDNIDETVLL SSALDTKTIP GESHAPQSDI QDQDFTGNAA  300
WLAGESQAEE STKYDGCDDI LLCKEILDSS AILNDPGLDS TNLEDIAGYA TQRARNDNES  360
CGISVLDSLE LDTPDFDLSS LYFCSQDSIL DWMDRL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.380780.0somatic embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G056400.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0980152e-91BT098015.1 Soybean clone JCVI-FLGm-26B21 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006604012.10.0SUPPRESSOR OF GAMMA RESPONSE 1
RefseqXP_028216994.10.0SUPPRESSOR OF GAMMA RESPONSE 1-like
TrEMBLA0A0R0EIE80.0A0A0R0EIE8_SOYBN; Uncharacterized protein
STRINGGLYMA19G08510.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01600.12e-86NAC domain containing protein 44