PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G047900.1.p
Common NameGLYMA_19G047900
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARR-B
Protein Properties Length: 386aa    MW: 43672.3 Da    PI: 7.2319
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G047900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like67.71.9e-21173222151
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                          kprl+W  eL +rFv+a+ +L G +kA Pk+ile+m+v+gLt ehv+SHLQ
  Glyma.19G047900.1.p 173 KPRLVWQGELQQRFVRAIMHL-GLDKAQPKRILEVMNVPGLTKEHVASHLQ 222
                          79*******************.***************************** PP
2Response_reg61.25.5e-21211301107
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH...ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEE.STTT.HHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd...pDlillDiempgmdGlellkeireeepklpiivvt.ahge.eed 85 
                          vl vdD+++v+  +++++ + +y +v +++d+++al+ ++ek+   +D+il+ + m +mdG+e+lk+ ++e  ++pii+++ ++++  + 
  Glyma.19G047900.1.p  21 VLAVDDDHNVLVFIKRMCIQWNY-RVIAFSDAPSALNFVREKKgcnIDVILTEVHMANMDGYEFLKHATKEI-NVPIIMMShDNATtTSA 108
                          799********************.999****************************************98877.9*******766667899 PP

                          HHHHHHTTESEEEESS--HHHH CS
         Response_reg  86 alealkaGakdflsKpfdpeel 107
                          + ea+k Ga df  Kp ++++ 
  Glyma.19G047900.1.p 109 LMEAVKHGACDFWIKPLNENQF 130
                          99***************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521724.7E-2617144IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23003.6E-2618157No hitNo description
SMARTSM004482.1E-1419134IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011028.92620138IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.7E-1621130IPR001789Signal transduction response regulator, receiver domain
CDDcd001565.08E-1822131No hitNo description
Gene3DG3DSA:1.10.10.608.8E-22171222IPR009057Homeodomain-like
SuperFamilySSF466898.6E-13171225IPR009057Homeodomain-like
TIGRFAMsTIGR015579.1E-20173223IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MATYPTKEKV NFHPFPEGLT VLAVDDDHNV LVFIKRMCIQ WNYRVIAFSD APSALNFVRE  60
KKGCNIDVIL TEVHMANMDG YEFLKHATKE INVPIIMMSH DNATTTSALM EAVKHGACDF  120
WIKPLNENQF RILWTQVARK MWNEKMLAKT DDSSVHGTRV MNTEKNSSTP PKKPRLVWQG  180
ELQQRFVRAI MHLGLDKAQP KRILEVMNVP GLTKEHVASH LQICMVIINI ISIICDWQKY  240
RVNLKKSNKM ITAHQENEMQ MQLPNNIESR GMVGASSIFP YAVLHPEEQW PNYYHLEEQQ  300
GVPYIAKYPS NMINNAKNFA QPIMTVDDAP ICGVLPQSNT VTANNALMHP DMYVAAAASS  360
EAANSDALSN SFNELSAILH GNYNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-13169246162ARR10-B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G047900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014627050.10.0two-component response regulator ARR2
TrEMBLA0A0R0EUY30.0A0A0R0EUY3_SOYBN; Uncharacterized protein
STRINGGLYMA19G06550.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3666822
Representative plantOGRP1067657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-48response regulator 2