PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.19G045900.1.p | ||||||||
Common Name | GLYMA_19G045900, LOC106797420 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 357aa MW: 40393.4 Da PI: 6.3986 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 41.2 | 2.1e-13 | 9 | 49 | 1 | 41 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41 k i+n++ r tf Rr+ ++KK +E S+LC++e+++i++ Glyma.19G045900.1.p 9 KLISNERSRRLTFKSRREILIKKTSEFSTLCGVEACLIVYD 49 569************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 16.329 | 1 | 52 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 8.7E-12 | 1 | 62 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.22E-16 | 1 | 78 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.29E-18 | 2 | 77 | No hit | No description |
PRINTS | PR00404 | 1.4E-6 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.4E-14 | 11 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-6 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-6 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MGRARITLKL ISNERSRRLT FKSRREILIK KTSEFSTLCG VEACLIVYDN GNGDVAPVTW 60 PKEPVLVHPI LQKYESQKNE RPPKTFGIED FLENRKNMVE ADISKVHKQI SNIKYPTWDP 120 SFTNMEEKQL KAFITQVNAK IMACDHVLQN KHQSKANNIM QNMAWGSASS SHIPSQITPT 180 PNNNGRVYVT NPINQFDGAS NHGMNMQQVD ACYGYIPTMA QESTNSTSSY PRQFNCLQNI 240 PQSQPIFEDL KPLDYKNEMV DFSYQVDVPL DSTNQLGVYA DWTNNQFGDF EDWINRPIDG 300 SNQPVNGDLV GLDNKPNESI LQNIPVQYQN KQQGGALHVL PPPLNGFQTD CYNVNF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.19G045900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014627212.1 | 0.0 | uncharacterized protein LOC106797420 | ||||
Refseq | XP_028216134.1 | 0.0 | uncharacterized protein LOC114398173 | ||||
TrEMBL | A0A445FCA2 | 0.0 | A0A445FCA2_GLYSO; Agamous-like MADS-box protein AGL82 | ||||
TrEMBL | K7MWJ8 | 0.0 | K7MWJ8_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA19G06145.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF534 | 31 | 111 | Representative plant | OGRP3677 | 6 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G55690.1 | 4e-23 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.19G045900.1.p |
Entrez Gene | 106797420 |