PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.19G044400.1.p | ||||||||
Common Name | GLYMA_19G044400, LOC100791288 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | TCP | ||||||||
Protein Properties | Length: 417aa MW: 46429.9 Da PI: 9.5165 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 142.6 | 2.9e-44 | 102 | 272 | 2 | 135 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssasec.eaess 78 ++kkdrhski+T++g+RdRRvRls+ +a++fFdLqd+LGfdk+s+t+eWL++++k+aikel+++ s+ss+s+c ++ + Glyma.19G044400.1.p 102 PPKKDRHSKIYTSQGLRDRRVRLSIAIARKFFDLQDMLGFDKASNTLEWLFNKSKRAIKELARSkhsnnnsdegakSFSSSSDCdDDCEV 191 78**************************************************************99999999999988888888644444 PP TCP 79 sssasnsssg............................kaaksaakskksqksaasalnlakesrakarararertrekmriknk 135 +s+ ++++++ aa++ +k k++qk++a + kesr+karararert++k + n+ Glyma.19G044400.1.p 192 VSEIKQKQQQlitcdaattqhnlqqgldsgdnkspttlVAARERMKLKRTQKEPA----KIKESREKARARARERTSNKIIMCNV 272 4444444444666999999999999999*99876665544444445555554444....888****************9766554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.2E-44 | 104 | 267 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 35.495 | 104 | 162 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 11.607 | 249 | 266 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 417 aa Download sequence Send to blast |
MFPYSSNPYP SFPSSSSSSY PPFPFLNLEN ASASNTLLHD PLSVPYIPTH HHNPSSIQEA 60 LNNLPVTDHN CGGGGGSAMT KPDSNGGGAP HYGISCFLTK KPPKKDRHSK IYTSQGLRDR 120 RVRLSIAIAR KFFDLQDMLG FDKASNTLEW LFNKSKRAIK ELARSKHSNN NSDEGAKSFS 180 SSSDCDDDCE VVSEIKQKQQ QLITCDAATT QHNLQQGLDS GDNKSPTTLV AARERMKLKR 240 TQKEPAKIKE SREKARARAR ERTSNKIIMC NVNTNNNNTG RRVQQQDLKK KCPAIENNHS 300 QIMHQSSSSP THNLVGNETP RDDFNVIEES IVIKRKLKPS LMSSSHHHHH HHQSLMIPKE 360 PPSFNNCEYH PFSNLSPNWD ANGSTGRSNF CAVASMNLST GLQIFGKSWE ECINPR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.19G044400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 0.0 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003555097.1 | 0.0 | transcription factor CYCLOIDEA | ||||
Refseq | XP_028217879.1 | 0.0 | transcription factor CYCLOIDEA-like | ||||
TrEMBL | A0A0B2R2P4 | 0.0 | A0A0B2R2P4_GLYSO; Transcription factor TB1 isoform A | ||||
TrEMBL | K7MWI6 | 0.0 | K7MWI6_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA19G05921.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1738 | 32 | 94 | Representative plant | OGRP180 | 15 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67260.2 | 1e-29 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.19G044400.1.p |
Entrez Gene | 100791288 |