PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G035500.1.p
Common NameGLYMA_19G035500
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 274aa    MW: 30714.4 Da    PI: 6.6317
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G035500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.21e-182978255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          y+GVr ++++g+WvAeIr+p++   r+r +lg+f ta+eAa a+++a+++l+g
  Glyma.19G035500.1.p 29 EYRGVR-HRTWGKWVAEIREPKK---RTRLWLGSFATAKEAAMAYDEAARRLYG 78
                         69***9.777**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.57E-292888No hitNo description
PfamPF008471.4E-112978IPR001471AP2/ERF domain
SMARTSM003803.2E-352992IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-292987IPR001471AP2/ERF domain
PROSITE profilePS5103222.1422986IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-202987IPR016177DNA-binding domain
PRINTSPR003672.4E-93041IPR001471AP2/ERF domain
PRINTSPR003672.4E-95268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MNTCKKSPLK PWKKGPTRGK GGPQNASCEY RGVRHRTWGK WVAEIREPKK RTRLWLGSFA  60
TAKEAAMAYD EAARRLYGPD AYLNLPHLQP RSTSTITLGK LKWFPSKNFI SMFPSCGLLN  120
VNAQPSVHLR GYKSLSEIQF SSNDPMAEIQ NVDSKNHGED ENPPKDVQTS SEEVLGDLQE  180
KPQIDLHEFL QQMGILKEER QLERTDSSGS STVREAVLTN DCDHLGGFSD KSVNREALIE  240
MHGLAGIQES EVTQLEAYEP NDDLTFSTSS WNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-163086360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G035500.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2350460.0AC235046.1 Glycine max strain Williams 82 clone GM_WBb0017A04, complete sequence.
GenBankAC2354520.0AC235452.1 Glycine max strain Williams 82 clone GM_WBb0166E13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003553420.10.0dehydration-responsive element-binding protein 2F
RefseqXP_028217981.10.0dehydration-responsive element-binding protein 2F-like
SwissprotQ9SVX53e-72DRE2F_ARATH; Dehydration-responsive element-binding protein 2F
TrEMBLA0A0R0ESF60.0A0A0R0ESF6_SOYBN; Uncharacterized protein
STRINGGLYMA19G04461.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54773150
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.12e-63ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]