PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.19G030900.1.p

Common Name

GLYMA_19G0309001, LOC100803100

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

TCP

Protein Properties

Length: 375aa MW: 41358 Da PI: 8.079

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.19G030900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	100.1	4.1e-31	51	180	2	109
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.........eaesssssa 82 g+kdrhsk++T +g+RdRRvRls+++a+ ++dLqd+LG+ ++sk ++WLl++ak++i+el+ ++ ++ +++ +++s s ++ Glyma.19G030900.1.p 51 FGGKDRHSKVCTIRGLRDRRVRLSVPTAIHLYDLQDRLGLNQPSKVVDWLLNAAKHEIDELPPLPIPPGNFTlgypslvscNEVSTSREG 140 689*************************************************************88888666654433311333333333 PP TCP 83 snsssg..........................kaaksaakskksqksaasaln 109 s g + + ++++++ ++n Glyma.19G030900.1.p 141 S----GqntllwkpkpgeimvsdhdkanwmnrR--------EGDDDDDN-NHN 180 3....1235577777777777654322222210........22222222.122 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	30.548	53	111	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.4E-28	53	183	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MINSTKETDF PLKQEGLSSS DHEKAKAPSS SSSSQWLKLK DPRIVRVSRA FGGKDRHSKV 60 CTIRGLRDRR VRLSVPTAIH LYDLQDRLGL NQPSKVVDWL LNAAKHEIDE LPPLPIPPGN 120 FTLGYPSLVS CNEVSTSREG SGQNTLLWKP KPGEIMVSDH DKANWMNRRE GDDDDDNNHN 180 NSNGDKQGSN NNCHGGALVL PNNLLPTRPN HPSFLGLMNT MPSLGYQWEP NSSAADVNVQ 240 WQNHGFFNQT DVHSIDVVPF PSTLALSTGN STSTTTTSQI LVCPPPPGAT TQPYFPSSHF 300 ATMEMNARQI NHYQMLSSSS HQNLLANSLN HPSSQQLMSQ SGKAPFSLRI RPKLFHSPNS 360 SESHSQKDQD FPSK*

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MINSTKETDF PLKQEGLSSS DHEKAKAPSS SSSSQWLKLK DPRIVRVSRA FGGKDRHSKV  60
CTIRGLRDRR VRLSVPTAIH LYDLQDRLGL NQPSKVVDWL LNAAKHEIDE LPPLPIPPGN  120
FTLGYPSLVS CNEVSTSREG SGQNTLLWKP KPGEIMVSDH DKANWMNRRE GDDDDDNNHN  180
NSNGDKQGSN NNCHGGALVL PNNLLPTRPN HPSFLGLMNT MPSLGYQWEP NSSAADVNVQ  240
WQNHGFFNQT DVHSIDVVPF PSTLALSTGN STSTTTTSQI LVCPPPPGAT TQPYFPSSHF  300
ATMEMNARQI NHYQMLSSSS HQNLLANSLN HPSSQQLMSQ SGKAPFSLRI RPKLFHSPNS  360
SESHSQKDQD FPSK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	8e-18	58	112	1	55	Putative transcription factor PCF6
5zkt_B	8e-18	58	112	1	55	Putative transcription factor PCF6
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.25005	0.0	flower\| leaf

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.19G030900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015044	1e-143	AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003554917.1	0.0	transcription factor TCP13
Refseq	XP_006603910.1	0.0	transcription factor TCP13
Refseq	XP_006603911.1	0.0	transcription factor TCP13
Refseq	XP_028216036.1	0.0	transcription factor TCP13-like
Refseq	XP_028216037.1	0.0	transcription factor TCP13-like
Refseq	XP_028216038.1	0.0	transcription factor TCP13-like
TrEMBL	A0A0B2SWD7	0.0	A0A0B2SWD7_GLYSO; Transcription factor TCP13
TrEMBL	K7MW90	0.0	K7MW90_SOYBN; Uncharacterized protein
STRING	GLYMA19G03786.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF932	34	119
Representative plant	OGRP180	15	163

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02150.1	1e-38	plastid transcription factor 1

Link Out ? help Back to Top
Phytozome	Glyma.19G030900.1.p
Entrez Gene	100803100