PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.19G023200.1.p | ||||||||
Common Name | GLYMA_19G023200, Glyma19g02710.1, LOC778120 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | Dof | ||||||||
Protein Properties | Length: 386aa MW: 41961.7 Da PI: 4.6951 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124 | 4.8e-39 | 121 | 180 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG +rnvPvG+grrknk+ Glyma.19G023200.1.p 121 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGVMRNVPVGAGRRKNKNF 180 7899*****************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-30 | 111 | 178 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 6.7E-32 | 123 | 179 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.901 | 125 | 179 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 127 | 163 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 386 aa Download sequence Send to blast |
MLESKDSTMK LFGKTIPAPE ISAGAPALSS GDADAVGVVQ NHGSSSVNGD GEEHEIEQDI 60 MGEETTESEK EDEVTNLDTV SRPGEVSINP STKKEDLTLK TSKKTEQEQG ENSQDKTLRK 120 PDKILPCPRC NSMDTKFCYY NNYNVNQPRH FCKNCQRYWT AGGVMRNVPV GAGRRKNKNF 180 TSQYRQITVP EAALLSSQPD LPNGVSHPSL NCNATLLAFG SDTPLCESMT SVLNLAEKAV 240 NNSTTNGFNG SEELEIPFAY VAGEKVNDDS NKSSDMSTKP MEGETTNRSQ EQVIENCHPF 300 PPHAPYFPGA PWPFPWNPAL WNSPVPSPPA FFPQGFTMPL YPAAAYWGLT IPGAWSIPWL 360 AQPSLPNSTV SNSGPDPIAR TIAMS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.18486 | 0.0 | hypocotyl |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.19G023200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031147 | 0.0 | KT031147.1 Glycine max clone HN_CCL_144 C2C2-Zn Dof transcription factor (Glyma19g02710.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001236866.2 | 0.0 | C2C2-Zn Dof transcription factor | ||||
Refseq | XP_028216461.1 | 0.0 | cyclic dof factor 2-like | ||||
TrEMBL | A0A445FBB2 | 0.0 | A0A445FBB2_GLYSO; Cyclic dof factor 2 | ||||
TrEMBL | I1N654 | 0.0 | I1N654_SOYBN; C2C2-Zn Dof transcription factor | ||||
STRING | GLYMA19G02710.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF36653 | 2 | 2 | Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39660.2 | 3e-62 | cycling DOF factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.19G023200.1.p |
Entrez Gene | 778120 |
Publications ? help Back to Top | |||
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