PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G022100.1.p
Common NameGLYMA_19G022100, LOC778078
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 338aa    MW: 36964.3 Da    PI: 8.0343
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G022100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.72.7e-181360148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd +lv +++++G+g+Wk++++  g+ R+ k+c++rw +yl
  Glyma.19G022100.1.p 13 KGPWTPEEDIILVSYIQEHGPGNWKAVPANTGLSRCSKSCRLRWTNYL 60
                         79********************************************97 PP
2Myb_DNA-binding50.35.3e-1666111148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg++T +E++ ++++ ++lG++ W++Ia++++  Rt++++k++w++yl
  Glyma.19G022100.1.p  66 RGNFTDQEEKMIIHLQALLGNR-WAAIAAYLP-QRTDNDIKNYWNTYL 111
                          89********************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.964864IPR017930Myb domain
SuperFamilySSF466899.54E-3110107IPR009057Homeodomain-like
SMARTSM007171.7E-151262IPR001005SANT/Myb domain
PfamPF002496.6E-171360IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-241467IPR009057Homeodomain-like
CDDcd001673.73E-121560No hitNo description
SMARTSM007172.0E-1565113IPR001005SANT/Myb domain
PROSITE profilePS5129420.4765115IPR017930Myb domain
PfamPF002493.4E-1566111IPR001005SANT/Myb domain
CDDcd001677.26E-1168110No hitNo description
Gene3DG3DSA:1.10.10.601.0E-2468116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MGRPPCCDKG VKKGPWTPEE DIILVSYIQE HGPGNWKAVP ANTGLSRCSK SCRLRWTNYL  60
RPGIKRGNFT DQEEKMIIHL QALLGNRWAA IAAYLPQRTD NDIKNYWNTY LKKKLNKKLE  120
AGSDQGSLLG GGHNNIGFSS VSQPMSRGQW ERRLQTDIHM AKKALSEALS PNKASSSSST  180
LLAESNSNLS NENSTFYNSN TNKPTTTQSM CYASSADNIA RLLKGWMKNT PKSASCAASA  240
VTQNSCSSSE GITTTKGSTT STSTVELSET FESLFGYESF DNYSSNSEFS PSLSPEATLF  300
QDEGKPDITT GLIDMPFSLL EKWLLDVDAG SQEKLGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-261311527128MYB TRANSFORMING PROTEIN
1mse_C2e-26131154105C-Myb DNA-Binding Domain
1msf_C2e-26131154105C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.280180.0cotyledon| flower| somatic embryo
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}.
UniprotTISSUE SPECIFICITY: Expressed in flowers, leaves and weakly in seed pods. {ECO:0000269|PubMed:1840903}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G022100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0961950.0BT096195.1 Soybean clone JCVI-FLGm-20D5 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003554888.10.0myb-related protein 306
SwissprotP813921e-109MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A0R0ET300.0A0A0R0ET30_SOYBN; Uncharacterized protein
STRINGGLYMA19G02600.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101634115
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28910.12e-82myb domain protein 30
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]