PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.19G021900.1.p | ||||||||
Common Name | GLYMA_19G021900, LOC100778120 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NAC | ||||||||
Protein Properties | Length: 368aa MW: 41529.9 Da PI: 7.0403 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 173.8 | 5.1e-54 | 14 | 139 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 +pGfrFhPtdeelv++yLk+k+++k+l++ e ik+vdiyk++PwdLpk + ++ekewyf+++rd+ky+++ r+nr+t++g+Wkatg+d++ Glyma.19G021900.1.p 14 MPGFRFHPTDEELVDFYLKRKIQQKSLPI-ELIKQVDIYKYDPWDLPKLAGTGEKEWYFYCPRDRKYRNSARPNRVTRAGFWKATGTDRP 102 79***************************.89***************9888999************************************ PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++s++g+ +glkk+Lvfy+gra kg ktdW+mhe+rl Glyma.19G021900.1.p 103 IYSSEGKCIGLKKSLVFYRGRAAKGMKTDWMMHEFRL 139 ***********************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.27E-57 | 11 | 170 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.164 | 13 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.1E-26 | 15 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
MEERNEMERI DDVMPGFRFH PTDEELVDFY LKRKIQQKSL PIELIKQVDI YKYDPWDLPK 60 LAGTGEKEWY FYCPRDRKYR NSARPNRVTR AGFWKATGTD RPIYSSEGKC IGLKKSLVFY 120 RGRAAKGMKT DWMMHEFRLP CISDSSPPKK LSDKSLPPSD SWAICRIFKK ANSFSMAQKA 180 LSLPWISQLP GGMVSDMFTQ GLNCHNIESP AIQFCGDKQD ELHQVSNNAI NTNFTASDIP 240 TYKPINNSTA SKSPVSDGDL AADNFIFYTG PTKCCSTLLD ATNSMLSHPN PDYIAFEEPN 300 QQHYSGFSIN LPQDMQQNMS TETGTTGFPF SLSPPYDAAW KASSVAWDSP PCPSDMSTTY 360 STNKCYT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-54 | 1 | 175 | 3 | 173 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.19G021900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 1e-121 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003554886.1 | 0.0 | putative NAC domain-containing protein 94 | ||||
Refseq | XP_028217734.1 | 0.0 | putative NAC domain-containing protein 94 | ||||
Swissprot | Q9FIW5 | 2e-94 | NAC94_ARATH; Putative NAC domain-containing protein 94 | ||||
TrEMBL | A0A445FB78 | 0.0 | A0A445FB78_GLYSO; Putative NAC domain-containing protein 94 | ||||
TrEMBL | I1N646 | 0.0 | I1N646_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA19G02580.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2013 | 34 | 90 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39820.1 | 5e-90 | NAC domain containing protein 94 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.19G021900.1.p |
Entrez Gene | 100778120 |